Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01347

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01346 and H281DRAFT_01347 are separated by 281 nucleotidesH281DRAFT_01347 and H281DRAFT_01348 are separated by 126 nucleotides H281DRAFT_01346: H281DRAFT_01346 - isovaleryl-CoA dehydrogenase, at 188,584 to 189,765 _01346 H281DRAFT_01347: H281DRAFT_01347 - transcriptional regulator, TetR family, at 190,047 to 190,802 _01347 H281DRAFT_01348: H281DRAFT_01348 - Uncharacterized conserved protein YecE, DUF72 family, at 190,929 to 191,786 _01348 Position (kb) 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 189.204 kb on + strand, within H281DRAFT_01346at 189.364 kb on - strand, within H281DRAFT_01346at 189.419 kb on + strand, within H281DRAFT_01346at 189.419 kb on + strand, within H281DRAFT_01346at 189.470 kb on - strand, within H281DRAFT_01346at 189.911 kb on - strandat 190.167 kb on + strand, within H281DRAFT_01347at 190.168 kb on - strand, within H281DRAFT_01347at 190.282 kb on - strand, within H281DRAFT_01347at 190.352 kb on + strand, within H281DRAFT_01347at 190.478 kb on + strand, within H281DRAFT_01347at 190.834 kb on + strandat 190.841 kb on - strandat 191.034 kb on + strand, within H281DRAFT_01348at 191.058 kb on + strand, within H281DRAFT_01348at 191.175 kb on + strand, within H281DRAFT_01348at 191.481 kb on + strand, within H281DRAFT_01348at 191.483 kb on + strand, within H281DRAFT_01348at 191.571 kb on - strand, within H281DRAFT_01348at 191.571 kb on - strand, within H281DRAFT_01348

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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189,204 + H281DRAFT_01346 0.52 -2.3
189,364 - H281DRAFT_01346 0.66 +0.0
189,419 + H281DRAFT_01346 0.71 -3.3
189,419 + H281DRAFT_01346 0.71 -1.5
189,470 - H281DRAFT_01346 0.75 -2.0
189,911 - -2.8
190,167 + H281DRAFT_01347 0.16 +1.1
190,168 - H281DRAFT_01347 0.16 +0.9
190,282 - H281DRAFT_01347 0.31 +1.9
190,352 + H281DRAFT_01347 0.40 -0.6
190,478 + H281DRAFT_01347 0.57 +1.3
190,834 + +0.5
190,841 - +0.0
191,034 + H281DRAFT_01348 0.12 -0.3
191,058 + H281DRAFT_01348 0.15 -0.2
191,175 + H281DRAFT_01348 0.29 +0.5
191,481 + H281DRAFT_01348 0.64 +0.2
191,483 + H281DRAFT_01348 0.65 +0.1
191,571 - H281DRAFT_01348 0.75 +0.2
191,571 - H281DRAFT_01348 0.75 -0.4

Or see this region's nucleotide sequence