Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01345 and H281DRAFT_01346 are separated by 97 nucleotides H281DRAFT_01346 and H281DRAFT_01347 are separated by 281 nucleotides
H281DRAFT_01345: H281DRAFT_01345 - 3-methylcrotonyl-CoA carboxylase beta subunit, at 186,879 to 188,486
_01345
H281DRAFT_01346: H281DRAFT_01346 - isovaleryl-CoA dehydrogenase, at 188,584 to 189,765
_01346
H281DRAFT_01347: H281DRAFT_01347 - transcriptional regulator, TetR family, at 190,047 to 190,802
_01347
Position (kb) 188
189
190 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 187.619 kb on - strand, within H281DRAFT_01345 at 187.637 kb on - strand, within H281DRAFT_01345 at 187.772 kb on + strand, within H281DRAFT_01345 at 187.773 kb on - strand, within H281DRAFT_01345 at 187.773 kb on - strand, within H281DRAFT_01345 at 187.773 kb on - strand, within H281DRAFT_01345 at 187.773 kb on - strand, within H281DRAFT_01345 at 187.906 kb on + strand, within H281DRAFT_01345 at 187.984 kb on + strand, within H281DRAFT_01345 at 188.065 kb on + strand, within H281DRAFT_01345 at 188.065 kb on + strand, within H281DRAFT_01345 at 188.066 kb on - strand, within H281DRAFT_01345 at 188.137 kb on + strand, within H281DRAFT_01345 at 188.138 kb on - strand at 188.242 kb on + strand, within H281DRAFT_01345 at 188.242 kb on + strand, within H281DRAFT_01345 at 188.243 kb on - strand, within H281DRAFT_01345 at 188.585 kb on + strand at 188.658 kb on - strand at 188.769 kb on - strand, within H281DRAFT_01346 at 188.849 kb on + strand, within H281DRAFT_01346 at 189.204 kb on + strand, within H281DRAFT_01346 at 189.364 kb on - strand, within H281DRAFT_01346 at 189.419 kb on + strand, within H281DRAFT_01346 at 189.419 kb on + strand, within H281DRAFT_01346 at 189.470 kb on - strand, within H281DRAFT_01346 at 189.911 kb on - strand at 190.167 kb on + strand, within H281DRAFT_01347 at 190.168 kb on - strand, within H281DRAFT_01347 at 190.282 kb on - strand, within H281DRAFT_01347 at 190.352 kb on + strand, within H281DRAFT_01347 at 190.478 kb on + strand, within H281DRAFT_01347
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 187,619 - H281DRAFT_01345 0.46 -2.2 187,637 - H281DRAFT_01345 0.47 -2.0 187,772 + H281DRAFT_01345 0.56 -3.9 187,773 - H281DRAFT_01345 0.56 -2.8 187,773 - H281DRAFT_01345 0.56 -3.1 187,773 - H281DRAFT_01345 0.56 -2.1 187,773 - H281DRAFT_01345 0.56 -2.3 187,906 + H281DRAFT_01345 0.64 -3.4 187,984 + H281DRAFT_01345 0.69 -3.8 188,065 + H281DRAFT_01345 0.74 -2.9 188,065 + H281DRAFT_01345 0.74 -2.9 188,066 - H281DRAFT_01345 0.74 -4.0 188,137 + H281DRAFT_01345 0.78 -3.6 188,138 - +0.8 188,242 + H281DRAFT_01345 0.85 -1.7 188,242 + H281DRAFT_01345 0.85 -3.8 188,243 - H281DRAFT_01345 0.85 -2.4 188,585 + -4.3 188,658 - -4.0 188,769 - H281DRAFT_01346 0.16 -4.4 188,849 + H281DRAFT_01346 0.22 -3.7 189,204 + H281DRAFT_01346 0.52 -2.3 189,364 - H281DRAFT_01346 0.66 +0.0 189,419 + H281DRAFT_01346 0.71 -3.3 189,419 + H281DRAFT_01346 0.71 -1.5 189,470 - H281DRAFT_01346 0.75 -2.0 189,911 - -2.8 190,167 + H281DRAFT_01347 0.16 +1.1 190,168 - H281DRAFT_01347 0.16 +0.9 190,282 - H281DRAFT_01347 0.31 +1.9 190,352 + H281DRAFT_01347 0.40 -0.6 190,478 + H281DRAFT_01347 0.57 +1.3
Or see this region's nucleotide sequence