Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01203

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01202 and H281DRAFT_01203 are separated by 80 nucleotidesH281DRAFT_01203 and H281DRAFT_01204 are separated by 95 nucleotides H281DRAFT_01202: H281DRAFT_01202 - methylmalonate-semialdehyde dehydrogenase [acylating], at 39,547 to 41,055 _01202 H281DRAFT_01203: H281DRAFT_01203 - acetyl-CoA synthetase, at 41,136 to 42,839 _01203 H281DRAFT_01204: H281DRAFT_01204 - hypothetical protein, at 42,935 to 44,068 _01204 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 40.537 kb on - strand, within H281DRAFT_01202at 40.537 kb on - strand, within H281DRAFT_01202at 40.640 kb on + strand, within H281DRAFT_01202at 40.698 kb on + strand, within H281DRAFT_01202at 40.737 kb on + strand, within H281DRAFT_01202at 40.804 kb on - strand, within H281DRAFT_01202at 40.826 kb on + strand, within H281DRAFT_01202at 41.286 kb on - strandat 41.294 kb on - strandat 41.294 kb on - strandat 41.457 kb on + strand, within H281DRAFT_01203at 41.527 kb on + strand, within H281DRAFT_01203at 41.533 kb on + strand, within H281DRAFT_01203at 41.536 kb on + strand, within H281DRAFT_01203at 41.623 kb on + strand, within H281DRAFT_01203at 42.119 kb on + strand, within H281DRAFT_01203at 42.197 kb on + strand, within H281DRAFT_01203at 42.241 kb on + strand, within H281DRAFT_01203at 42.903 kb on + strandat 42.985 kb on - strandat 43.279 kb on - strand, within H281DRAFT_01204

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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40,537 - H281DRAFT_01202 0.66 -0.2
40,537 - H281DRAFT_01202 0.66 -1.9
40,640 + H281DRAFT_01202 0.72 -1.3
40,698 + H281DRAFT_01202 0.76 -1.0
40,737 + H281DRAFT_01202 0.79 -2.5
40,804 - H281DRAFT_01202 0.83 -1.6
40,826 + H281DRAFT_01202 0.85 -0.6
41,286 - +1.1
41,294 - -0.0
41,294 - -0.0
41,457 + H281DRAFT_01203 0.19 -1.9
41,527 + H281DRAFT_01203 0.23 -1.8
41,533 + H281DRAFT_01203 0.23 -1.1
41,536 + H281DRAFT_01203 0.23 -2.0
41,623 + H281DRAFT_01203 0.29 -1.8
42,119 + H281DRAFT_01203 0.58 -2.0
42,197 + H281DRAFT_01203 0.62 -1.4
42,241 + H281DRAFT_01203 0.65 -2.0
42,903 + -1.7
42,985 - +0.5
43,279 - H281DRAFT_01204 0.30 -0.2

Or see this region's nucleotide sequence