Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01178 and H281DRAFT_01179 are separated by 44 nucleotides H281DRAFT_01179 and H281DRAFT_01180 are separated by 78 nucleotides H281DRAFT_01180 and H281DRAFT_01181 are separated by 62 nucleotides
H281DRAFT_01178: H281DRAFT_01178 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 12,672 to 13,484
_01178
H281DRAFT_01179: H281DRAFT_01179 - short chain enoyl-CoA hydratase, at 13,529 to 14,302
_01179
H281DRAFT_01180: H281DRAFT_01180 - acyl-CoA dehydrogenase, at 14,381 to 16,669
_01180
H281DRAFT_01181: H281DRAFT_01181 - Acyl-CoA synthetase (NDP forming), at 16,732 to 18,816
_01181
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -1
0
1 at 13.914 kb on - strand, within H281DRAFT_01179 at 14.007 kb on - strand, within H281DRAFT_01179 at 14.196 kb on - strand, within H281DRAFT_01179 at 14.293 kb on - strand at 14.309 kb on - strand at 14.348 kb on - strand at 14.359 kb on - strand at 14.942 kb on - strand, within H281DRAFT_01180 at 15.237 kb on + strand, within H281DRAFT_01180 at 15.428 kb on + strand, within H281DRAFT_01180 at 15.500 kb on + strand, within H281DRAFT_01180 at 15.500 kb on + strand, within H281DRAFT_01180 at 15.510 kb on - strand at 15.510 kb on - strand, within H281DRAFT_01180 at 15.590 kb on - strand, within H281DRAFT_01180 at 15.601 kb on + strand, within H281DRAFT_01180 at 15.602 kb on - strand, within H281DRAFT_01180 at 15.676 kb on - strand, within H281DRAFT_01180 at 15.895 kb on + strand, within H281DRAFT_01180 at 15.951 kb on - strand, within H281DRAFT_01180 at 16.395 kb on - strand, within H281DRAFT_01180 at 16.562 kb on - strand at 16.750 kb on - strand at 17.347 kb on + strand, within H281DRAFT_01181
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 13,914 - H281DRAFT_01179 0.50 +0.2 14,007 - H281DRAFT_01179 0.62 +0.2 14,196 - H281DRAFT_01179 0.86 -0.2 14,293 - +0.1 14,309 - +0.3 14,348 - +0.2 14,359 - +0.5 14,942 - H281DRAFT_01180 0.25 +0.2 15,237 + H281DRAFT_01180 0.37 +0.3 15,428 + H281DRAFT_01180 0.46 -0.0 15,500 + H281DRAFT_01180 0.49 +0.2 15,500 + H281DRAFT_01180 0.49 +0.3 15,510 - +0.8 15,510 - H281DRAFT_01180 0.49 -0.7 15,590 - H281DRAFT_01180 0.53 -0.4 15,601 + H281DRAFT_01180 0.53 -0.2 15,602 - H281DRAFT_01180 0.53 +0.5 15,676 - H281DRAFT_01180 0.57 +0.3 15,895 + H281DRAFT_01180 0.66 -0.4 15,951 - H281DRAFT_01180 0.69 -0.2 16,395 - H281DRAFT_01180 0.88 +0.8 16,562 - -0.8 16,750 - +0.5 17,347 + H281DRAFT_01181 0.29 +0.0
Or see this region's nucleotide sequence