Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01088

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01087 and H281DRAFT_01088 are separated by 383 nucleotidesH281DRAFT_01088 and H281DRAFT_01089 are separated by 52 nucleotides H281DRAFT_01087: H281DRAFT_01087 - Sugar phosphate permease, at 1,219,353 to 1,220,750 _01087 H281DRAFT_01088: H281DRAFT_01088 - Lactate dehydrogenase, at 1,221,134 to 1,222,087 _01088 H281DRAFT_01089: H281DRAFT_01089 - transcriptional regulator, LysR family, at 1,222,140 to 1,223,075 _01089 Position (kb) 1221 1222 1223Strain fitness (log2 ratio) -1 0 1at 1220.192 kb on - strand, within H281DRAFT_01087at 1220.192 kb on - strand, within H281DRAFT_01087at 1220.365 kb on - strand, within H281DRAFT_01087at 1220.383 kb on + strand, within H281DRAFT_01087at 1220.850 kb on + strandat 1220.924 kb on - strandat 1221.114 kb on - strandat 1221.246 kb on - strand, within H281DRAFT_01088

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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1,220,192 - H281DRAFT_01087 0.60 -0.9
1,220,192 - H281DRAFT_01087 0.60 -0.7
1,220,365 - H281DRAFT_01087 0.72 -0.3
1,220,383 + H281DRAFT_01087 0.74 +0.4
1,220,850 + +0.2
1,220,924 - +0.7
1,221,114 - +1.0
1,221,246 - H281DRAFT_01088 0.12 +0.9

Or see this region's nucleotide sequence