Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01057 and H281DRAFT_01058 overlap by 4 nucleotides H281DRAFT_01058 and H281DRAFT_01059 are separated by 213 nucleotides
H281DRAFT_01057: H281DRAFT_01057 - monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-), at 1,186,787 to 1,188,340
_01057
H281DRAFT_01058: H281DRAFT_01058 - monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-), at 1,188,337 to 1,189,491
_01058
H281DRAFT_01059: H281DRAFT_01059 - Predicted transcriptional regulators, at 1,189,705 to 1,190,628
_01059
Position (kb)
1188
1189
1190 Strain fitness (log2 ratio)
-1
0
1 at 1187.580 kb on + strand, within H281DRAFT_01057 at 1187.580 kb on + strand, within H281DRAFT_01057 at 1187.730 kb on + strand, within H281DRAFT_01057 at 1188.157 kb on - strand, within H281DRAFT_01057 at 1188.410 kb on - strand at 1188.526 kb on - strand, within H281DRAFT_01058 at 1188.763 kb on - strand, within H281DRAFT_01058 at 1188.771 kb on - strand, within H281DRAFT_01058 at 1189.404 kb on - strand at 1189.645 kb on - strand at 1189.658 kb on - strand at 1189.868 kb on - strand at 1189.926 kb on - strand, within H281DRAFT_01059 at 1189.926 kb on - strand, within H281DRAFT_01059 at 1189.926 kb on - strand, within H281DRAFT_01059 at 1189.929 kb on + strand, within H281DRAFT_01059 at 1189.929 kb on + strand, within H281DRAFT_01059 at 1190.125 kb on - strand, within H281DRAFT_01059 at 1190.267 kb on - strand, within H281DRAFT_01059 at 1190.291 kb on + strand, within H281DRAFT_01059
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 1,187,580 + H281DRAFT_01057 0.51 -0.5 1,187,580 + H281DRAFT_01057 0.51 +0.3 1,187,730 + H281DRAFT_01057 0.61 +0.1 1,188,157 - H281DRAFT_01057 0.88 +0.7 1,188,410 - +0.2 1,188,526 - H281DRAFT_01058 0.16 -1.2 1,188,763 - H281DRAFT_01058 0.37 -1.7 1,188,771 - H281DRAFT_01058 0.38 -0.1 1,189,404 - -0.2 1,189,645 - +0.5 1,189,658 - -0.1 1,189,868 - +1.0 1,189,926 - H281DRAFT_01059 0.24 +0.7 1,189,926 - H281DRAFT_01059 0.24 -0.5 1,189,926 - H281DRAFT_01059 0.24 +0.5 1,189,929 + H281DRAFT_01059 0.24 -1.2 1,189,929 + H281DRAFT_01059 0.24 -0.4 1,190,125 - H281DRAFT_01059 0.45 -0.3 1,190,267 - H281DRAFT_01059 0.61 -0.3 1,190,291 + H281DRAFT_01059 0.63 -0.2
Or see this region's nucleotide sequence