Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00851

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00849 and H281DRAFT_00850 are separated by 518 nucleotidesH281DRAFT_00850 and H281DRAFT_00851 are separated by 49 nucleotidesH281DRAFT_00851 and H281DRAFT_00852 are separated by 125 nucleotides H281DRAFT_00849: H281DRAFT_00849 - conserved hypothetical protein, at 938,760 to 939,620 _00849 H281DRAFT_00850: H281DRAFT_00850 - hypothetical protein, at 940,139 to 940,306 _00850 H281DRAFT_00851: H281DRAFT_00851 - polyhydroxyalkanoate synthase, at 940,356 to 942,116 _00851 H281DRAFT_00852: H281DRAFT_00852 - acetyl-CoA acetyltransferase, at 942,242 to 943,423 _00852 Position (kb) 940 941 942 943Strain fitness (log2 ratio) -2 -1 0 1at 939.537 kb on + strandat 939.537 kb on + strandat 939.543 kb on + strandat 939.544 kb on - strandat 939.662 kb on + strandat 939.663 kb on - strandat 939.663 kb on - strandat 939.663 kb on - strandat 939.727 kb on + strandat 939.728 kb on - strandat 939.735 kb on + strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.764 kb on + strandat 939.765 kb on - strandat 939.839 kb on + strandat 939.840 kb on - strandat 939.840 kb on - strandat 939.849 kb on + strandat 939.850 kb on - strandat 939.925 kb on + strandat 939.925 kb on + strandat 939.939 kb on + strandat 940.030 kb on + strandat 940.127 kb on + strandat 940.128 kb on - strandat 940.502 kb on + strandat 940.502 kb on + strandat 940.502 kb on + strandat 940.503 kb on - strandat 940.503 kb on - strandat 940.554 kb on + strand, within H281DRAFT_00851at 940.555 kb on - strand, within H281DRAFT_00851at 940.692 kb on + strand, within H281DRAFT_00851at 940.693 kb on - strand, within H281DRAFT_00851at 941.016 kb on + strand, within H281DRAFT_00851at 941.017 kb on - strand, within H281DRAFT_00851at 941.017 kb on - strand, within H281DRAFT_00851at 941.039 kb on - strand, within H281DRAFT_00851at 941.039 kb on - strand, within H281DRAFT_00851at 941.082 kb on + strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.085 kb on + strand, within H281DRAFT_00851at 941.085 kb on + strand, within H281DRAFT_00851at 941.086 kb on - strand, within H281DRAFT_00851at 941.169 kb on - strand, within H281DRAFT_00851at 941.192 kb on + strand, within H281DRAFT_00851at 941.193 kb on - strand, within H281DRAFT_00851at 941.293 kb on + strand, within H281DRAFT_00851at 941.405 kb on - strand, within H281DRAFT_00851at 941.566 kb on - strand, within H281DRAFT_00851at 941.605 kb on - strand, within H281DRAFT_00851at 941.643 kb on + strand, within H281DRAFT_00851at 941.643 kb on + strand, within H281DRAFT_00851at 941.643 kb on + strand, within H281DRAFT_00851at 941.643 kb on + strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.663 kb on + strand, within H281DRAFT_00851at 941.663 kb on + strand, within H281DRAFT_00851at 941.663 kb on + strand, within H281DRAFT_00851at 941.664 kb on - strand, within H281DRAFT_00851at 941.668 kb on - strand, within H281DRAFT_00851at 941.668 kb on - strand, within H281DRAFT_00851at 941.668 kb on - strand, within H281DRAFT_00851at 941.705 kb on + strand, within H281DRAFT_00851at 941.706 kb on - strand, within H281DRAFT_00851at 941.758 kb on - strand, within H281DRAFT_00851at 941.758 kb on - strand, within H281DRAFT_00851at 941.758 kb on - strand, within H281DRAFT_00851at 941.758 kb on - strand, within H281DRAFT_00851at 941.778 kb on - strand, within H281DRAFT_00851at 941.778 kb on - strand, within H281DRAFT_00851at 941.799 kb on + strand, within H281DRAFT_00851at 942.696 kb on - strand, within H281DRAFT_00852at 942.696 kb on - strand, within H281DRAFT_00852at 942.696 kb on - strand, within H281DRAFT_00852at 942.696 kb on - strand, within H281DRAFT_00852at 942.705 kb on - strand, within H281DRAFT_00852at 943.076 kb on + strand, within H281DRAFT_00852

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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939,537 + +0.7
939,537 + +0.5
939,543 + +0.7
939,544 - +0.0
939,662 + +0.2
939,663 - -0.1
939,663 - -0.1
939,663 - -0.1
939,727 + +0.2
939,728 - -0.1
939,735 + +0.5
939,736 - -0.2
939,736 - -0.5
939,736 - -0.4
939,736 - +0.6
939,764 + -0.0
939,765 - -0.2
939,839 + +0.3
939,840 - -0.5
939,840 - -0.8
939,849 + +0.1
939,850 - -0.6
939,925 + -0.2
939,925 + +0.7
939,939 + +1.4
940,030 + -0.2
940,127 + +0.0
940,128 - -0.9
940,502 + -0.5
940,502 + -1.3
940,502 + -1.4
940,503 - -1.1
940,503 - -1.4
940,554 + H281DRAFT_00851 0.11 +0.3
940,555 - H281DRAFT_00851 0.11 -2.1
940,692 + H281DRAFT_00851 0.19 -1.4
940,693 - H281DRAFT_00851 0.19 -1.3
941,016 + H281DRAFT_00851 0.37 +1.0
941,017 - H281DRAFT_00851 0.38 -0.5
941,017 - H281DRAFT_00851 0.38 -0.0
941,039 - H281DRAFT_00851 0.39 -0.9
941,039 - H281DRAFT_00851 0.39 -0.3
941,082 + H281DRAFT_00851 0.41 -0.2
941,083 - H281DRAFT_00851 0.41 -1.0
941,083 - H281DRAFT_00851 0.41 -0.5
941,083 - H281DRAFT_00851 0.41 +0.2
941,083 - H281DRAFT_00851 0.41 -0.8
941,083 - H281DRAFT_00851 0.41 +0.3
941,085 + H281DRAFT_00851 0.41 -0.2
941,085 + H281DRAFT_00851 0.41 -0.4
941,086 - H281DRAFT_00851 0.41 -0.2
941,169 - H281DRAFT_00851 0.46 -0.6
941,192 + H281DRAFT_00851 0.47 +0.0
941,193 - H281DRAFT_00851 0.48 -1.6
941,293 + H281DRAFT_00851 0.53 -0.9
941,405 - H281DRAFT_00851 0.60 -1.4
941,566 - H281DRAFT_00851 0.69 -0.8
941,605 - H281DRAFT_00851 0.71 -1.1
941,643 + H281DRAFT_00851 0.73 -1.7
941,643 + H281DRAFT_00851 0.73 -1.1
941,643 + H281DRAFT_00851 0.73 -1.5
941,643 + H281DRAFT_00851 0.73 -0.1
941,644 - H281DRAFT_00851 0.73 -1.1
941,644 - H281DRAFT_00851 0.73 -0.7
941,644 - H281DRAFT_00851 0.73 -0.4
941,644 - H281DRAFT_00851 0.73 -2.2
941,644 - H281DRAFT_00851 0.73 -0.3
941,644 - H281DRAFT_00851 0.73 -0.4
941,644 - H281DRAFT_00851 0.73 +0.0
941,663 + H281DRAFT_00851 0.74 -1.0
941,663 + H281DRAFT_00851 0.74 -0.9
941,663 + H281DRAFT_00851 0.74 -1.4
941,664 - H281DRAFT_00851 0.74 -0.8
941,668 - H281DRAFT_00851 0.75 -0.3
941,668 - H281DRAFT_00851 0.75 -1.7
941,668 - H281DRAFT_00851 0.75 -0.6
941,705 + H281DRAFT_00851 0.77 -1.2
941,706 - H281DRAFT_00851 0.77 +0.2
941,758 - H281DRAFT_00851 0.80 -0.9
941,758 - H281DRAFT_00851 0.80 -2.0
941,758 - H281DRAFT_00851 0.80 -0.1
941,758 - H281DRAFT_00851 0.80 -1.6
941,778 - H281DRAFT_00851 0.81 -0.3
941,778 - H281DRAFT_00851 0.81 -0.6
941,799 + H281DRAFT_00851 0.82 -1.4
942,696 - H281DRAFT_00852 0.38 -0.6
942,696 - H281DRAFT_00852 0.38 -0.9
942,696 - H281DRAFT_00852 0.38 -0.5
942,696 - H281DRAFT_00852 0.38 -0.9
942,705 - H281DRAFT_00852 0.39 -0.8
943,076 + H281DRAFT_00852 0.71 -0.6

Or see this region's nucleotide sequence