Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00723

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00722 and H281DRAFT_00723 are separated by 623 nucleotidesH281DRAFT_00723 and H281DRAFT_00724 are separated by 41 nucleotides H281DRAFT_00722: H281DRAFT_00722 - transcriptional regulator, Crp/Fnr family, at 813,086 to 813,820 _00722 H281DRAFT_00723: H281DRAFT_00723 - beta-mannosidase, at 814,444 to 817,029 _00723 H281DRAFT_00724: H281DRAFT_00724 - protein of unknown function (DUF1839), at 817,071 to 818,156 _00724 Position (kb) 814 815 816 817 818Strain fitness (log2 ratio) -1 0 1at 813.683 kb on - strand, within H281DRAFT_00722at 813.890 kb on - strandat 813.891 kb on + strandat 814.439 kb on + strandat 815.534 kb on + strandat 815.550 kb on - strand, within H281DRAFT_00723at 815.656 kb on + strand, within H281DRAFT_00723at 815.877 kb on - strand, within H281DRAFT_00723at 815.894 kb on + strand, within H281DRAFT_00723at 815.963 kb on - strand, within H281DRAFT_00723at 816.064 kb on - strand, within H281DRAFT_00723at 816.344 kb on - strand, within H281DRAFT_00723at 816.360 kb on + strand, within H281DRAFT_00723at 816.483 kb on + strand, within H281DRAFT_00723at 816.598 kb on + strand, within H281DRAFT_00723at 816.918 kb on + strandat 816.918 kb on + strandat 816.919 kb on - strandat 817.569 kb on + strand, within H281DRAFT_00724at 817.728 kb on + strand, within H281DRAFT_00724at 817.960 kb on + strand, within H281DRAFT_00724

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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813,683 - H281DRAFT_00722 0.81 +0.6
813,890 - +1.1
813,891 + +0.2
814,439 + -0.0
815,534 + -0.4
815,550 - H281DRAFT_00723 0.43 +0.0
815,656 + H281DRAFT_00723 0.47 +0.3
815,877 - H281DRAFT_00723 0.55 +1.0
815,894 + H281DRAFT_00723 0.56 +1.7
815,963 - H281DRAFT_00723 0.59 +0.6
816,064 - H281DRAFT_00723 0.63 +1.0
816,344 - H281DRAFT_00723 0.73 +0.0
816,360 + H281DRAFT_00723 0.74 +0.0
816,483 + H281DRAFT_00723 0.79 +0.2
816,598 + H281DRAFT_00723 0.83 +1.6
816,918 + +0.1
816,918 + -0.1
816,919 - -0.1
817,569 + H281DRAFT_00724 0.46 +0.4
817,728 + H281DRAFT_00724 0.60 -0.0
817,960 + H281DRAFT_00724 0.82 -1.4

Or see this region's nucleotide sequence