Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00578 and H281DRAFT_00579 are separated by 201 nucleotides H281DRAFT_00579 and H281DRAFT_00580 are separated by 278 nucleotides
H281DRAFT_00578: H281DRAFT_00578 - transcriptional regulator, LysR family, at 644,309 to 645,211
_00578
H281DRAFT_00579: H281DRAFT_00579 - Nucleotide-binding universal stress protein, UspA family, at 645,413 to 645,847
_00579
H281DRAFT_00580: H281DRAFT_00580 - isocitrate lyase, at 646,126 to 647,433
_00580
Position (kb) 645
646 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 644.820 kb on - strand, within H281DRAFT_00578 at 644.933 kb on - strand, within H281DRAFT_00578 at 644.985 kb on + strand, within H281DRAFT_00578 at 644.986 kb on - strand, within H281DRAFT_00578 at 645.181 kb on + strand at 645.181 kb on + strand at 645.181 kb on + strand at 645.181 kb on + strand at 645.181 kb on + strand at 645.181 kb on + strand at 645.181 kb on + strand at 645.181 kb on + strand at 645.181 kb on + strand at 645.181 kb on + strand at 645.182 kb on - strand at 645.182 kb on - strand at 645.182 kb on - strand at 645.182 kb on - strand at 645.182 kb on - strand at 645.186 kb on - strand at 645.186 kb on - strand at 645.186 kb on - strand at 645.200 kb on + strand at 645.201 kb on - strand at 645.280 kb on + strand at 645.281 kb on - strand at 645.330 kb on - strand at 645.657 kb on + strand, within H281DRAFT_00579 at 645.658 kb on - strand, within H281DRAFT_00579 at 645.695 kb on + strand, within H281DRAFT_00579 at 645.695 kb on + strand, within H281DRAFT_00579 at 645.861 kb on + strand at 646.008 kb on + strand at 646.008 kb on + strand at 646.009 kb on - strand at 646.128 kb on - strand at 646.361 kb on + strand, within H281DRAFT_00580 at 646.362 kb on - strand, within H281DRAFT_00580 at 646.407 kb on - strand, within H281DRAFT_00580 at 646.407 kb on - strand, within H281DRAFT_00580 at 646.494 kb on - strand, within H281DRAFT_00580 at 646.596 kb on - strand, within H281DRAFT_00580 at 646.605 kb on - strand, within H281DRAFT_00580 at 646.605 kb on - strand, within H281DRAFT_00580 at 646.653 kb on - strand, within H281DRAFT_00580 at 646.716 kb on + strand, within H281DRAFT_00580 at 646.716 kb on + strand, within H281DRAFT_00580 at 646.717 kb on - strand, within H281DRAFT_00580 at 646.717 kb on - strand, within H281DRAFT_00580
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 644,820 - H281DRAFT_00578 0.57 -0.0 644,933 - H281DRAFT_00578 0.69 +0.4 644,985 + H281DRAFT_00578 0.75 -1.1 644,986 - H281DRAFT_00578 0.75 -0.1 645,181 + -0.8 645,181 + -0.7 645,181 + -0.5 645,181 + -0.5 645,181 + -0.4 645,181 + -0.8 645,181 + -0.2 645,181 + -1.4 645,181 + -2.1 645,181 + -0.4 645,182 - +0.3 645,182 - -0.5 645,182 - -0.2 645,182 - -0.2 645,182 - +0.4 645,186 - +0.1 645,186 - +0.0 645,186 - -0.2 645,200 + -0.3 645,201 - +0.7 645,280 + -0.3 645,281 - +0.4 645,330 - +0.1 645,657 + H281DRAFT_00579 0.56 +0.1 645,658 - H281DRAFT_00579 0.56 +0.3 645,695 + H281DRAFT_00579 0.65 +1.0 645,695 + H281DRAFT_00579 0.65 +0.3 645,861 + +1.0 646,008 + -0.1 646,008 + -0.5 646,009 - -0.5 646,128 - +0.3 646,361 + H281DRAFT_00580 0.18 -3.1 646,362 - H281DRAFT_00580 0.18 -3.0 646,407 - H281DRAFT_00580 0.21 -3.9 646,407 - H281DRAFT_00580 0.21 -3.5 646,494 - H281DRAFT_00580 0.28 -2.0 646,596 - H281DRAFT_00580 0.36 -2.7 646,605 - H281DRAFT_00580 0.37 -2.8 646,605 - H281DRAFT_00580 0.37 -1.9 646,653 - H281DRAFT_00580 0.40 -3.5 646,716 + H281DRAFT_00580 0.45 -3.0 646,716 + H281DRAFT_00580 0.45 -2.3 646,717 - H281DRAFT_00580 0.45 -2.8 646,717 - H281DRAFT_00580 0.45 -2.7
Or see this region's nucleotide sequence