Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00576

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00574 and H281DRAFT_00575 are separated by 140 nucleotidesH281DRAFT_00575 and H281DRAFT_00576 are separated by 147 nucleotidesH281DRAFT_00576 and H281DRAFT_00577 are separated by 100 nucleotides H281DRAFT_00574: H281DRAFT_00574 - transcriptional regulator, AraC family, at 639,989 to 640,900 _00574 H281DRAFT_00575: H281DRAFT_00575 - Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family, at 641,041 to 641,442 _00575 H281DRAFT_00576: H281DRAFT_00576 - malate synthase, at 641,590 to 643,191 _00576 H281DRAFT_00577: H281DRAFT_00577 - 2-haloacid dehalogenase, at 643,292 to 644,161 _00577 Position (kb) 641 642 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 640.602 kb on + strand, within H281DRAFT_00574at 640.603 kb on - strand, within H281DRAFT_00574at 640.603 kb on - strand, within H281DRAFT_00574at 640.737 kb on + strand, within H281DRAFT_00574at 640.737 kb on + strand, within H281DRAFT_00574at 640.737 kb on + strand, within H281DRAFT_00574at 640.737 kb on + strand, within H281DRAFT_00574at 640.738 kb on - strand, within H281DRAFT_00574at 640.738 kb on - strand, within H281DRAFT_00574at 640.763 kb on - strand, within H281DRAFT_00574at 640.763 kb on - strand, within H281DRAFT_00574at 640.763 kb on - strand, within H281DRAFT_00574at 640.763 kb on - strand, within H281DRAFT_00574at 640.968 kb on + strandat 640.968 kb on + strandat 640.968 kb on + strandat 640.969 kb on - strandat 640.996 kb on + strandat 640.997 kb on - strandat 640.997 kb on - strandat 641.019 kb on + strandat 641.057 kb on + strandat 641.057 kb on + strandat 641.057 kb on + strandat 641.057 kb on + strandat 641.058 kb on - strandat 641.058 kb on - strandat 641.058 kb on - strandat 641.060 kb on - strandat 641.234 kb on - strand, within H281DRAFT_00575at 641.284 kb on + strand, within H281DRAFT_00575at 641.462 kb on + strandat 641.462 kb on + strandat 641.462 kb on + strandat 641.567 kb on + strandat 641.567 kb on + strandat 641.567 kb on + strandat 641.567 kb on + strandat 641.604 kb on - strandat 641.678 kb on + strandat 641.679 kb on - strandat 641.689 kb on - strandat 641.809 kb on + strand, within H281DRAFT_00576at 641.901 kb on - strand, within H281DRAFT_00576at 642.254 kb on + strand, within H281DRAFT_00576at 642.351 kb on - strand, within H281DRAFT_00576at 642.351 kb on - strand, within H281DRAFT_00576at 642.382 kb on - strand, within H281DRAFT_00576at 642.382 kb on - strand, within H281DRAFT_00576at 642.382 kb on - strand, within H281DRAFT_00576at 642.382 kb on - strand, within H281DRAFT_00576at 642.398 kb on + strand, within H281DRAFT_00576at 642.551 kb on + strand, within H281DRAFT_00576at 642.552 kb on - strand, within H281DRAFT_00576at 642.552 kb on - strand, within H281DRAFT_00576at 642.558 kb on - strand, within H281DRAFT_00576at 642.692 kb on - strand, within H281DRAFT_00576at 642.723 kb on + strand, within H281DRAFT_00576at 642.723 kb on + strand, within H281DRAFT_00576at 642.724 kb on - strand, within H281DRAFT_00576at 642.724 kb on - strand, within H281DRAFT_00576at 642.725 kb on + strand, within H281DRAFT_00576at 642.726 kb on - strand, within H281DRAFT_00576at 642.726 kb on - strand, within H281DRAFT_00576at 642.726 kb on - strand, within H281DRAFT_00576at 643.243 kb on + strandat 643.260 kb on + strandat 643.261 kb on - strandat 643.314 kb on - strandat 643.557 kb on + strand, within H281DRAFT_00577at 643.558 kb on - strand, within H281DRAFT_00577at 643.579 kb on - strand, within H281DRAFT_00577at 643.858 kb on - strand, within H281DRAFT_00577at 643.858 kb on - strand, within H281DRAFT_00577at 643.858 kb on - strand, within H281DRAFT_00577at 644.007 kb on + strand, within H281DRAFT_00577at 644.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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640,602 + H281DRAFT_00574 0.67 -1.3
640,603 - H281DRAFT_00574 0.67 +0.1
640,603 - H281DRAFT_00574 0.67 -0.1
640,737 + H281DRAFT_00574 0.82 -0.3
640,737 + H281DRAFT_00574 0.82 +0.3
640,737 + H281DRAFT_00574 0.82 +0.4
640,737 + H281DRAFT_00574 0.82 +0.4
640,738 - H281DRAFT_00574 0.82 +0.3
640,738 - H281DRAFT_00574 0.82 +0.4
640,763 - H281DRAFT_00574 0.85 +0.5
640,763 - H281DRAFT_00574 0.85 +0.1
640,763 - H281DRAFT_00574 0.85 +0.2
640,763 - H281DRAFT_00574 0.85 +0.1
640,968 + -0.2
640,968 + +0.1
640,968 + -0.0
640,969 - -1.1
640,996 + +0.3
640,997 - +0.5
640,997 - -0.6
641,019 + +1.0
641,057 + +0.1
641,057 + -0.2
641,057 + -0.2
641,057 + +0.7
641,058 - -0.2
641,058 - +1.9
641,058 - -0.1
641,060 - -0.7
641,234 - H281DRAFT_00575 0.48 -0.0
641,284 + H281DRAFT_00575 0.60 -0.2
641,462 + +0.5
641,462 + -0.1
641,462 + -0.0
641,567 + -0.2
641,567 + -0.5
641,567 + +0.3
641,567 + +0.9
641,604 - -1.6
641,678 + -0.3
641,679 - -2.4
641,689 - -1.7
641,809 + H281DRAFT_00576 0.14 -2.5
641,901 - H281DRAFT_00576 0.19 -2.0
642,254 + H281DRAFT_00576 0.41 -2.0
642,351 - H281DRAFT_00576 0.48 -2.2
642,351 - H281DRAFT_00576 0.48 -0.4
642,382 - H281DRAFT_00576 0.49 -1.9
642,382 - H281DRAFT_00576 0.49 -1.1
642,382 - H281DRAFT_00576 0.49 -1.2
642,382 - H281DRAFT_00576 0.49 -1.1
642,398 + H281DRAFT_00576 0.50 -1.8
642,551 + H281DRAFT_00576 0.60 -0.9
642,552 - H281DRAFT_00576 0.60 -1.6
642,552 - H281DRAFT_00576 0.60 -1.6
642,558 - H281DRAFT_00576 0.60 -1.1
642,692 - H281DRAFT_00576 0.69 -1.9
642,723 + H281DRAFT_00576 0.71 -2.5
642,723 + H281DRAFT_00576 0.71 -2.2
642,724 - H281DRAFT_00576 0.71 -0.8
642,724 - H281DRAFT_00576 0.71 +0.2
642,725 + H281DRAFT_00576 0.71 -1.2
642,726 - H281DRAFT_00576 0.71 -1.6
642,726 - H281DRAFT_00576 0.71 -2.4
642,726 - H281DRAFT_00576 0.71 -2.9
643,243 + -0.9
643,260 + -1.7
643,261 - -0.2
643,314 - +0.8
643,557 + H281DRAFT_00577 0.30 -1.7
643,558 - H281DRAFT_00577 0.31 +0.6
643,579 - H281DRAFT_00577 0.33 +0.9
643,858 - H281DRAFT_00577 0.65 +0.6
643,858 - H281DRAFT_00577 0.65 +2.1
643,858 - H281DRAFT_00577 0.65 -0.1
644,007 + H281DRAFT_00577 0.82 -1.5
644,112 + -1.3

Or see this region's nucleotide sequence