Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00556

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00555 and H281DRAFT_00556 are separated by 49 nucleotidesH281DRAFT_00556 and H281DRAFT_00557 are separated by 12 nucleotides H281DRAFT_00555: H281DRAFT_00555 - HEAT repeat, at 624,027 to 625,046 _00555 H281DRAFT_00556: H281DRAFT_00556 - NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit, at 625,096 to 625,341 _00556 H281DRAFT_00557: H281DRAFT_00557 - Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, at 625,354 to 627,093 _00557 Position (kb) 625 626Strain fitness (log2 ratio) -1 0 1at 624.186 kb on - strand, within H281DRAFT_00555at 624.302 kb on + strand, within H281DRAFT_00555at 624.688 kb on - strand, within H281DRAFT_00555at 624.777 kb on + strand, within H281DRAFT_00555at 624.990 kb on - strandat 625.060 kb on + strandat 625.061 kb on - strandat 625.110 kb on - strandat 625.188 kb on + strand, within H281DRAFT_00556at 625.249 kb on + strand, within H281DRAFT_00556at 625.501 kb on - strandat 625.553 kb on + strand, within H281DRAFT_00557at 625.751 kb on + strand, within H281DRAFT_00557at 625.827 kb on - strand, within H281DRAFT_00557at 625.893 kb on - strand, within H281DRAFT_00557at 625.925 kb on + strand, within H281DRAFT_00557at 625.926 kb on - strand, within H281DRAFT_00557at 625.982 kb on + strand, within H281DRAFT_00557at 626.334 kb on - strand, within H281DRAFT_00557at 626.334 kb on - strand, within H281DRAFT_00557

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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624,186 - H281DRAFT_00555 0.16 +0.1
624,302 + H281DRAFT_00555 0.27 +0.1
624,688 - H281DRAFT_00555 0.65 +0.1
624,777 + H281DRAFT_00555 0.74 -0.1
624,990 - +0.4
625,060 + +0.5
625,061 - +0.9
625,110 - -0.7
625,188 + H281DRAFT_00556 0.37 -0.9
625,249 + H281DRAFT_00556 0.62 -0.6
625,501 - +0.8
625,553 + H281DRAFT_00557 0.11 +0.4
625,751 + H281DRAFT_00557 0.23 -0.2
625,827 - H281DRAFT_00557 0.27 +0.3
625,893 - H281DRAFT_00557 0.31 -0.5
625,925 + H281DRAFT_00557 0.33 +0.3
625,926 - H281DRAFT_00557 0.33 -0.3
625,982 + H281DRAFT_00557 0.36 +0.4
626,334 - H281DRAFT_00557 0.56 +0.3
626,334 - H281DRAFT_00557 0.56 +0.1

Or see this region's nucleotide sequence