Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00444

Experiment: 4-Methyl-2-oxopentanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00443 and H281DRAFT_00444 are separated by 113 nucleotidesH281DRAFT_00444 and H281DRAFT_00445 are separated by 23 nucleotides H281DRAFT_00443: H281DRAFT_00443 - Fe-S cluster biosynthesis and repair protein YggX, at 487,142 to 487,417 _00443 H281DRAFT_00444: H281DRAFT_00444 - N-acetylglutamate synthase, at 487,531 to 488,919 _00444 H281DRAFT_00445: H281DRAFT_00445 - ATP-dependent helicase HrpA, at 488,943 to 493,397 _00445 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1at 486.684 kb on - strandat 486.798 kb on - strandat 486.874 kb on - strandat 487.039 kb on - strandat 487.482 kb on - strandat 487.497 kb on + strandat 487.498 kb on - strandat 487.518 kb on + strandat 487.518 kb on + strandat 487.575 kb on - strandat 487.802 kb on + strand, within H281DRAFT_00444at 488.112 kb on - strand, within H281DRAFT_00444at 488.112 kb on - strand, within H281DRAFT_00444at 488.112 kb on - strandat 488.112 kb on - strand, within H281DRAFT_00444at 488.930 kb on - strandat 488.930 kb on - strandat 488.930 kb on - strandat 488.930 kb on - strandat 488.931 kb on + strandat 489.479 kb on - strand, within H281DRAFT_00445at 489.777 kb on + strand, within H281DRAFT_00445at 489.777 kb on + strand, within H281DRAFT_00445

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C)
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486,684 - -0.4
486,798 - +0.0
486,874 - -0.8
487,039 - -1.0
487,482 - -0.4
487,497 + +0.5
487,498 - -0.6
487,518 + +0.2
487,518 + +0.0
487,575 - -1.5
487,802 + H281DRAFT_00444 0.20 -0.5
488,112 - H281DRAFT_00444 0.42 -2.5
488,112 - H281DRAFT_00444 0.42 -2.2
488,112 - -1.2
488,112 - H281DRAFT_00444 0.42 -0.3
488,930 - -1.3
488,930 - -1.0
488,930 - +0.3
488,930 - -0.5
488,931 + +0.6
489,479 - H281DRAFT_00445 0.12 -0.6
489,777 + H281DRAFT_00445 0.19 +0.2
489,777 + H281DRAFT_00445 0.19 +0.1

Or see this region's nucleotide sequence