Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00237 and H281DRAFT_00238 are separated by 206 nucleotides H281DRAFT_00238 and H281DRAFT_00239 are separated by 70 nucleotides H281DRAFT_00239 and H281DRAFT_00240 are separated by 35 nucleotides H281DRAFT_00240 and H281DRAFT_00241 are separated by 91 nucleotides H281DRAFT_00241 and H281DRAFT_00242 are separated by 153 nucleotides H281DRAFT_00242 and H281DRAFT_00243 are separated by 21 nucleotides H281DRAFT_00243 and H281DRAFT_00244 are separated by 99 nucleotides
H281DRAFT_00237: H281DRAFT_00237 - Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family, at 257,574 to 257,891
_00237
H281DRAFT_00238: H281DRAFT_00238 - hypothetical protein, at 258,098 to 258,361
_00238
H281DRAFT_00239: H281DRAFT_00239 - hypothetical protein, at 258,432 to 258,623
_00239
H281DRAFT_00240: H281DRAFT_00240 - two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family, at 258,659 to 260,059
_00240
H281DRAFT_00241: H281DRAFT_00241 - hypothetical protein, at 260,151 to 260,366
_00241
H281DRAFT_00242: H281DRAFT_00242 - hypothetical protein, at 260,520 to 260,795
_00242
H281DRAFT_00243: H281DRAFT_00243 - hypothetical protein, at 260,817 to 260,921
_00243
H281DRAFT_00244: H281DRAFT_00244 - trehalose 6-phosphate synthase, at 261,021 to 262,448
_00244
Position (kb) 258
259
260
261 Strain fitness (log2 ratio) -1
0
1 at 257.696 kb on - strand, within H281DRAFT_00237 at 257.866 kb on + strand at 257.900 kb on + strand at 257.934 kb on - strand at 258.119 kb on - strand at 258.165 kb on - strand, within H281DRAFT_00238 at 258.360 kb on - strand at 258.360 kb on - strand at 258.445 kb on - strand at 258.446 kb on + strand at 258.446 kb on + strand at 258.467 kb on + strand, within H281DRAFT_00239 at 258.607 kb on - strand at 258.607 kb on - strand at 258.607 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.694 kb on + strand at 259.113 kb on - strand, within H281DRAFT_00240 at 259.340 kb on + strand, within H281DRAFT_00240 at 259.341 kb on - strand, within H281DRAFT_00240 at 259.553 kb on + strand, within H281DRAFT_00240 at 259.553 kb on + strand, within H281DRAFT_00240 at 259.570 kb on - strand, within H281DRAFT_00240 at 259.570 kb on - strand, within H281DRAFT_00240 at 259.570 kb on - strand, within H281DRAFT_00240 at 259.570 kb on - strand, within H281DRAFT_00240 at 259.709 kb on + strand, within H281DRAFT_00240 at 259.709 kb on + strand, within H281DRAFT_00240 at 259.745 kb on + strand, within H281DRAFT_00240 at 259.745 kb on + strand, within H281DRAFT_00240 at 259.746 kb on - strand, within H281DRAFT_00240 at 259.746 kb on - strand, within H281DRAFT_00240 at 259.970 kb on + strand at 259.970 kb on + strand at 259.972 kb on + strand at 259.973 kb on - strand at 260.058 kb on - strand at 260.412 kb on - strand at 260.448 kb on + strand at 260.470 kb on + strand at 260.470 kb on + strand at 260.471 kb on - strand at 260.724 kb on + strand, within H281DRAFT_00242 at 260.724 kb on + strand, within H281DRAFT_00242 at 260.725 kb on - strand, within H281DRAFT_00242 at 260.761 kb on - strand, within H281DRAFT_00242 at 260.815 kb on - strand at 260.917 kb on + strand at 260.918 kb on - strand at 261.007 kb on + strand at 261.007 kb on + strand at 261.007 kb on + strand at 261.007 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 257,696 - H281DRAFT_00237 0.38 +0.4 257,866 + -0.1 257,900 + +0.5 257,934 - +1.1 258,119 - -0.3 258,165 - H281DRAFT_00238 0.25 +0.1 258,360 - +0.6 258,360 - -1.3 258,445 - +0.6 258,446 + +1.5 258,446 + +0.3 258,467 + H281DRAFT_00239 0.18 -0.9 258,607 - +0.7 258,607 - +0.7 258,607 - +0.3 258,670 - +0.4 258,670 - +0.8 258,670 - +0.7 258,670 - +0.5 258,670 - +1.1 258,670 - +1.0 258,694 + +0.7 259,113 - H281DRAFT_00240 0.32 +0.7 259,340 + H281DRAFT_00240 0.49 +0.3 259,341 - H281DRAFT_00240 0.49 +0.2 259,553 + H281DRAFT_00240 0.64 +0.6 259,553 + H281DRAFT_00240 0.64 +0.5 259,570 - H281DRAFT_00240 0.65 +0.6 259,570 - H281DRAFT_00240 0.65 +0.7 259,570 - H281DRAFT_00240 0.65 +0.5 259,570 - H281DRAFT_00240 0.65 +0.3 259,709 + H281DRAFT_00240 0.75 -1.5 259,709 + H281DRAFT_00240 0.75 -0.1 259,745 + H281DRAFT_00240 0.78 +0.5 259,745 + H281DRAFT_00240 0.78 +0.4 259,746 - H281DRAFT_00240 0.78 +0.0 259,746 - H281DRAFT_00240 0.78 +1.4 259,970 + -0.7 259,970 + +0.8 259,972 + -0.3 259,973 - +1.0 260,058 - +0.3 260,412 - +0.4 260,448 + +0.2 260,470 + +0.1 260,470 + -0.2 260,471 - +0.2 260,724 + H281DRAFT_00242 0.74 +0.4 260,724 + H281DRAFT_00242 0.74 -0.1 260,725 - H281DRAFT_00242 0.74 +0.1 260,761 - H281DRAFT_00242 0.87 +0.2 260,815 - -0.5 260,917 + +0.0 260,918 - +0.1 261,007 + -0.5 261,007 + +0.3 261,007 + -0.1 261,007 + +0.3
Or see this region's nucleotide sequence