Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05110

Experiment: Glycine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05090 and PGA1_c05100 are separated by 27 nucleotidesPGA1_c05100 and PGA1_c05110 are separated by 161 nucleotidesPGA1_c05110 and PGA1_c05120 overlap by 10 nucleotidesPGA1_c05120 and PGA1_c05130 overlap by 1 nucleotides PGA1_c05090: PGA1_c05090 - putative glycosyl transferase, at 501,768 to 502,712 _c05090 PGA1_c05100: PGA1_c05100 - transcriptional regulator, GntR type, at 502,740 to 503,402 _c05100 PGA1_c05110: PGA1_c05110 - dihydrodipicolinate synthase domain-containing protein, at 503,564 to 504,523 _c05110 PGA1_c05120: PGA1_c05120 - 4-hydroxyproline epimerase, at 504,514 to 505,458 _c05120 PGA1_c05130: PGA1_c05130 - aldehyde dehydrogenase, at 505,458 to 506,888 _c05130 Position (kb) 503 504 505Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 502.643 kb on + strandat 502.651 kb on - strandat 502.651 kb on - strandat 502.660 kb on + strandat 502.660 kb on + strandat 502.697 kb on + strandat 502.722 kb on - strandat 502.745 kb on - strandat 502.751 kb on + strandat 502.751 kb on - strandat 502.759 kb on - strandat 502.759 kb on - strandat 502.783 kb on + strandat 502.808 kb on - strand, within PGA1_c05100at 502.810 kb on + strand, within PGA1_c05100at 502.825 kb on - strand, within PGA1_c05100at 502.864 kb on + strand, within PGA1_c05100at 502.872 kb on - strand, within PGA1_c05100at 502.872 kb on - strand, within PGA1_c05100at 502.890 kb on - strand, within PGA1_c05100at 502.958 kb on + strand, within PGA1_c05100at 503.016 kb on + strand, within PGA1_c05100at 503.017 kb on - strand, within PGA1_c05100at 503.019 kb on - strand, within PGA1_c05100at 503.019 kb on - strand, within PGA1_c05100at 503.053 kb on - strand, within PGA1_c05100at 503.067 kb on + strand, within PGA1_c05100at 503.096 kb on - strand, within PGA1_c05100at 503.118 kb on + strand, within PGA1_c05100at 503.118 kb on + strand, within PGA1_c05100at 503.118 kb on + strand, within PGA1_c05100at 503.177 kb on + strand, within PGA1_c05100at 503.185 kb on + strand, within PGA1_c05100at 503.193 kb on + strand, within PGA1_c05100at 503.200 kb on + strand, within PGA1_c05100at 503.321 kb on + strand, within PGA1_c05100at 503.337 kb on - strandat 503.371 kb on + strandat 503.420 kb on - strandat 503.420 kb on - strandat 503.422 kb on + strandat 503.441 kb on - strandat 503.441 kb on - strandat 503.510 kb on + strandat 503.518 kb on - strandat 503.544 kb on + strandat 503.555 kb on + strandat 503.571 kb on + strandat 503.607 kb on - strandat 503.619 kb on - strandat 503.624 kb on - strandat 503.690 kb on - strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.700 kb on - strand, within PGA1_c05110at 503.700 kb on - strand, within PGA1_c05110at 503.700 kb on - strand, within PGA1_c05110at 503.816 kb on - strand, within PGA1_c05110at 503.816 kb on - strand, within PGA1_c05110at 503.816 kb on - strand, within PGA1_c05110at 503.843 kb on + strand, within PGA1_c05110at 503.862 kb on + strand, within PGA1_c05110at 503.862 kb on + strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.943 kb on - strand, within PGA1_c05110at 503.974 kb on - strand, within PGA1_c05110at 504.022 kb on + strand, within PGA1_c05110at 504.048 kb on + strand, within PGA1_c05110at 504.048 kb on + strand, within PGA1_c05110at 504.048 kb on + strand, within PGA1_c05110at 504.056 kb on + strand, within PGA1_c05110at 504.056 kb on - strand, within PGA1_c05110at 504.056 kb on - strand, within PGA1_c05110at 504.056 kb on - strand, within PGA1_c05110at 504.077 kb on - strand, within PGA1_c05110at 504.104 kb on + strand, within PGA1_c05110at 504.104 kb on + strand, within PGA1_c05110at 504.147 kb on + strand, within PGA1_c05110at 504.157 kb on - strand, within PGA1_c05110at 504.221 kb on + strand, within PGA1_c05110at 504.245 kb on - strand, within PGA1_c05110at 504.292 kb on + strand, within PGA1_c05110at 504.292 kb on + strand, within PGA1_c05110at 504.313 kb on + strand, within PGA1_c05110at 504.321 kb on + strand, within PGA1_c05110at 504.321 kb on + strand, within PGA1_c05110at 504.329 kb on - strand, within PGA1_c05110at 504.383 kb on + strand, within PGA1_c05110at 504.471 kb on - strandat 504.474 kb on + strandat 504.474 kb on + strandat 504.482 kb on + strandat 504.490 kb on - strandat 504.490 kb on - strandat 504.554 kb on + strandat 504.562 kb on - strandat 504.644 kb on + strand, within PGA1_c05120at 504.652 kb on - strand, within PGA1_c05120at 504.652 kb on - strand, within PGA1_c05120at 504.717 kb on - strand, within PGA1_c05120at 504.787 kb on - strand, within PGA1_c05120at 504.805 kb on + strand, within PGA1_c05120at 504.813 kb on - strand, within PGA1_c05120at 504.815 kb on + strand, within PGA1_c05120at 504.857 kb on + strand, within PGA1_c05120at 504.983 kb on - strand, within PGA1_c05120at 505.004 kb on + strand, within PGA1_c05120at 505.010 kb on - strand, within PGA1_c05120at 505.012 kb on - strand, within PGA1_c05120at 505.022 kb on + strand, within PGA1_c05120at 505.029 kb on - strand, within PGA1_c05120at 505.032 kb on + strand, within PGA1_c05120at 505.073 kb on + strand, within PGA1_c05120at 505.075 kb on - strand, within PGA1_c05120at 505.078 kb on + strand, within PGA1_c05120at 505.085 kb on - strand, within PGA1_c05120at 505.085 kb on - strand, within PGA1_c05120at 505.101 kb on - strand, within PGA1_c05120at 505.118 kb on + strand, within PGA1_c05120at 505.142 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.147 kb on + strand, within PGA1_c05120at 505.150 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.155 kb on - strand, within PGA1_c05120at 505.198 kb on + strand, within PGA1_c05120at 505.198 kb on + strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.206 kb on - strand, within PGA1_c05120at 505.286 kb on + strand, within PGA1_c05120at 505.286 kb on + strand, within PGA1_c05120at 505.286 kb on + strand, within PGA1_c05120at 505.313 kb on + strand, within PGA1_c05120at 505.331 kb on + strand, within PGA1_c05120at 505.420 kb on - strandat 505.442 kb on + strandat 505.447 kb on + strandat 505.450 kb on - strandat 505.497 kb on - strandat 505.497 kb on - strandat 505.498 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (C)
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502,643 + +0.3
502,651 - +1.6
502,651 - -0.4
502,660 + +1.2
502,660 + -0.5
502,697 + +0.2
502,722 - -0.4
502,745 - +0.4
502,751 + +1.4
502,751 - +0.9
502,759 - +2.0
502,759 - +1.4
502,783 + -0.3
502,808 - PGA1_c05100 0.10 -0.5
502,810 + PGA1_c05100 0.11 -0.4
502,825 - PGA1_c05100 0.13 -0.6
502,864 + PGA1_c05100 0.19 -0.2
502,872 - PGA1_c05100 0.20 -0.2
502,872 - PGA1_c05100 0.20 +0.4
502,890 - PGA1_c05100 0.23 -0.2
502,958 + PGA1_c05100 0.33 -0.3
503,016 + PGA1_c05100 0.42 -1.1
503,017 - PGA1_c05100 0.42 -0.9
503,019 - PGA1_c05100 0.42 +0.1
503,019 - PGA1_c05100 0.42 +0.6
503,053 - PGA1_c05100 0.47 +0.6
503,067 + PGA1_c05100 0.49 +0.3
503,096 - PGA1_c05100 0.54 -0.8
503,118 + PGA1_c05100 0.57 -1.2
503,118 + PGA1_c05100 0.57 +1.0
503,118 + PGA1_c05100 0.57 -1.1
503,177 + PGA1_c05100 0.66 -3.2
503,185 + PGA1_c05100 0.67 -1.0
503,193 + PGA1_c05100 0.68 -0.4
503,200 + PGA1_c05100 0.69 +0.2
503,321 + PGA1_c05100 0.88 +0.0
503,337 - +0.6
503,371 + +0.8
503,420 - -0.6
503,420 - +0.8
503,422 + +2.0
503,441 - -0.5
503,441 - +0.8
503,510 + +0.4
503,518 - +0.8
503,544 + -0.1
503,555 + -0.5
503,571 + -0.8
503,607 - -0.2
503,619 - +0.9
503,624 - -0.1
503,690 - PGA1_c05110 0.13 +0.3
503,692 + PGA1_c05110 0.13 +0.2
503,692 + PGA1_c05110 0.13 +0.6
503,692 + PGA1_c05110 0.13 +0.4
503,692 + PGA1_c05110 0.13 -0.4
503,700 - PGA1_c05110 0.14 +0.6
503,700 - PGA1_c05110 0.14 +0.7
503,700 - PGA1_c05110 0.14 +0.6
503,816 - PGA1_c05110 0.26 +0.6
503,816 - PGA1_c05110 0.26 -0.1
503,816 - PGA1_c05110 0.26 +1.2
503,843 + PGA1_c05110 0.29 -0.1
503,862 + PGA1_c05110 0.31 +1.7
503,862 + PGA1_c05110 0.31 +1.9
503,870 - PGA1_c05110 0.32 -0.6
503,870 - PGA1_c05110 0.32 +1.0
503,870 - PGA1_c05110 0.32 -2.0
503,870 - PGA1_c05110 0.32 +0.3
503,943 - PGA1_c05110 0.39 -0.4
503,974 - PGA1_c05110 0.43 +0.8
504,022 + PGA1_c05110 0.48 -0.0
504,048 + PGA1_c05110 0.50 +0.7
504,048 + PGA1_c05110 0.50 -0.2
504,048 + PGA1_c05110 0.50 +0.2
504,056 + PGA1_c05110 0.51 -1.0
504,056 - PGA1_c05110 0.51 +0.7
504,056 - PGA1_c05110 0.51 -2.4
504,056 - PGA1_c05110 0.51 -0.3
504,077 - PGA1_c05110 0.53 +0.5
504,104 + PGA1_c05110 0.56 +1.6
504,104 + PGA1_c05110 0.56 +0.3
504,147 + PGA1_c05110 0.61 +1.4
504,157 - PGA1_c05110 0.62 +1.6
504,221 + PGA1_c05110 0.68 +0.0
504,245 - PGA1_c05110 0.71 +0.3
504,292 + PGA1_c05110 0.76 +1.2
504,292 + PGA1_c05110 0.76 -0.8
504,313 + PGA1_c05110 0.78 +0.6
504,321 + PGA1_c05110 0.79 +0.8
504,321 + PGA1_c05110 0.79 +0.2
504,329 - PGA1_c05110 0.80 +0.9
504,383 + PGA1_c05110 0.85 +0.6
504,471 - +1.2
504,474 + -0.1
504,474 + +0.5
504,482 + -0.6
504,490 - +1.9
504,490 - -0.3
504,554 + -0.4
504,562 - -0.4
504,644 + PGA1_c05120 0.14 -0.0
504,652 - PGA1_c05120 0.15 +0.7
504,652 - PGA1_c05120 0.15 +0.2
504,717 - PGA1_c05120 0.21 +0.4
504,787 - PGA1_c05120 0.29 +0.6
504,805 + PGA1_c05120 0.31 -1.0
504,813 - PGA1_c05120 0.32 -0.3
504,815 + PGA1_c05120 0.32 -0.5
504,857 + PGA1_c05120 0.36 +0.4
504,983 - PGA1_c05120 0.50 -0.7
505,004 + PGA1_c05120 0.52 -0.1
505,010 - PGA1_c05120 0.52 -1.5
505,012 - PGA1_c05120 0.53 +0.4
505,022 + PGA1_c05120 0.54 -0.7
505,029 - PGA1_c05120 0.54 +0.1
505,032 + PGA1_c05120 0.55 +0.1
505,073 + PGA1_c05120 0.59 -0.2
505,075 - PGA1_c05120 0.59 +0.0
505,078 + PGA1_c05120 0.60 +0.4
505,085 - PGA1_c05120 0.60 +0.6
505,085 - PGA1_c05120 0.60 +0.0
505,101 - PGA1_c05120 0.62 +0.5
505,118 + PGA1_c05120 0.64 +0.6
505,142 + PGA1_c05120 0.66 -0.1
505,147 + PGA1_c05120 0.67 +0.5
505,147 + PGA1_c05120 0.67 +0.1
505,147 + PGA1_c05120 0.67 +0.2
505,147 + PGA1_c05120 0.67 +0.4
505,150 - PGA1_c05120 0.67 +0.8
505,155 - PGA1_c05120 0.68 +0.6
505,155 - PGA1_c05120 0.68 -0.6
505,155 - PGA1_c05120 0.68 +0.6
505,155 - PGA1_c05120 0.68 +0.8
505,155 - PGA1_c05120 0.68 +0.2
505,155 - PGA1_c05120 0.68 +0.1
505,155 - PGA1_c05120 0.68 +0.7
505,198 + PGA1_c05120 0.72 +1.2
505,198 + PGA1_c05120 0.72 +0.9
505,206 - PGA1_c05120 0.73 -0.8
505,206 - PGA1_c05120 0.73 +0.4
505,206 - PGA1_c05120 0.73 +1.1
505,206 - PGA1_c05120 0.73 -2.0
505,206 - PGA1_c05120 0.73 -0.1
505,286 + PGA1_c05120 0.82 +0.6
505,286 + PGA1_c05120 0.82 +0.0
505,286 + PGA1_c05120 0.82 -0.8
505,313 + PGA1_c05120 0.85 -0.4
505,331 + PGA1_c05120 0.86 +0.2
505,420 - -0.3
505,442 + +0.3
505,447 + -0.3
505,450 - +0.6
505,497 - +1.1
505,497 - -0.3
505,498 - -0.4

Or see this region's nucleotide sequence