Experiment: Glycine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01780 and PGA1_262p01790 are separated by 91 nucleotides PGA1_262p01790 and PGA1_262p01800 overlap by 4 nucleotides PGA1_262p01800 and PGA1_262p01810 are separated by 14 nucleotides
PGA1_262p01780: PGA1_262p01780 - transcriptional regulator, LysR family, at 195,114 to 196,019
_262p01780
PGA1_262p01790: PGA1_262p01790 - aldehyde dehydrogenase, at 196,111 to 197,562
_262p01790
PGA1_262p01800: PGA1_262p01800 - putative membrane dipeptidase, at 197,559 to 198,536
_262p01800
PGA1_262p01810: PGA1_262p01810 - hypothetical protein, at 198,551 to 200,254
_262p01810
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 195.124 kb on + strand at 195.132 kb on - strand at 195.132 kb on - strand at 195.134 kb on + strand at 195.134 kb on + strand at 195.159 kb on + strand at 195.173 kb on + strand at 195.173 kb on + strand at 195.181 kb on - strand at 195.181 kb on - strand at 195.181 kb on - strand at 195.260 kb on + strand, within PGA1_262p01780 at 195.268 kb on - strand, within PGA1_262p01780 at 195.527 kb on - strand, within PGA1_262p01780 at 195.588 kb on + strand, within PGA1_262p01780 at 195.808 kb on + strand, within PGA1_262p01780 at 195.808 kb on + strand, within PGA1_262p01780 at 196.061 kb on + strand at 196.072 kb on + strand at 196.072 kb on + strand at 196.074 kb on + strand at 196.080 kb on - strand at 196.151 kb on - strand at 196.192 kb on - strand at 196.192 kb on - strand at 196.226 kb on + strand at 196.255 kb on - strand at 196.280 kb on - strand, within PGA1_262p01790 at 196.280 kb on - strand, within PGA1_262p01790 at 196.354 kb on - strand, within PGA1_262p01790 at 196.383 kb on + strand, within PGA1_262p01790 at 196.421 kb on + strand, within PGA1_262p01790 at 196.431 kb on + strand, within PGA1_262p01790 at 196.439 kb on - strand, within PGA1_262p01790 at 196.478 kb on - strand, within PGA1_262p01790 at 196.540 kb on + strand, within PGA1_262p01790 at 196.602 kb on + strand, within PGA1_262p01790 at 196.757 kb on + strand, within PGA1_262p01790 at 196.842 kb on + strand, within PGA1_262p01790 at 196.895 kb on + strand, within PGA1_262p01790 at 197.149 kb on - strand, within PGA1_262p01790 at 197.189 kb on + strand, within PGA1_262p01790 at 197.377 kb on - strand, within PGA1_262p01790 at 197.474 kb on + strand at 197.482 kb on - strand at 197.482 kb on - strand at 197.482 kb on - strand at 197.495 kb on + strand at 197.541 kb on - strand at 197.576 kb on + strand at 197.730 kb on - strand, within PGA1_262p01800 at 197.730 kb on - strand, within PGA1_262p01800 at 197.813 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.082 kb on - strand, within PGA1_262p01800 at 198.089 kb on - strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.274 kb on + strand, within PGA1_262p01800 at 198.279 kb on + strand, within PGA1_262p01800 at 198.362 kb on - strand, within PGA1_262p01800 at 198.448 kb on + strand at 198.456 kb on - strand at 198.470 kb on + strand at 198.479 kb on + strand at 198.479 kb on + strand at 198.525 kb on + strand at 198.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (C) remove 195,124 + -0.6 195,132 - +0.1 195,132 - +1.0 195,134 + -0.3 195,134 + -0.6 195,159 + -1.1 195,173 + -0.0 195,173 + +0.2 195,181 - +0.6 195,181 - -0.7 195,181 - +0.0 195,260 + PGA1_262p01780 0.16 -0.7 195,268 - PGA1_262p01780 0.17 +0.8 195,527 - PGA1_262p01780 0.46 +0.3 195,588 + PGA1_262p01780 0.52 +0.3 195,808 + PGA1_262p01780 0.77 +1.7 195,808 + PGA1_262p01780 0.77 +0.2 196,061 + -0.8 196,072 + +0.2 196,072 + +1.0 196,074 + +1.8 196,080 - -1.4 196,151 - -0.7 196,192 - -0.2 196,192 - +0.1 196,226 + -0.6 196,255 - +0.1 196,280 - PGA1_262p01790 0.12 -1.4 196,280 - PGA1_262p01790 0.12 -1.8 196,354 - PGA1_262p01790 0.17 -0.8 196,383 + PGA1_262p01790 0.19 -0.1 196,421 + PGA1_262p01790 0.21 +0.8 196,431 + PGA1_262p01790 0.22 -0.1 196,439 - PGA1_262p01790 0.23 -0.7 196,478 - PGA1_262p01790 0.25 -0.2 196,540 + PGA1_262p01790 0.30 -0.7 196,602 + PGA1_262p01790 0.34 +1.4 196,757 + PGA1_262p01790 0.44 -0.1 196,842 + PGA1_262p01790 0.50 +1.6 196,895 + PGA1_262p01790 0.54 -1.1 197,149 - PGA1_262p01790 0.71 +0.1 197,189 + PGA1_262p01790 0.74 +1.6 197,377 - PGA1_262p01790 0.87 -0.1 197,474 + +1.2 197,482 - +0.8 197,482 - -1.0 197,482 - -1.0 197,495 + +1.6 197,541 - -0.4 197,576 + +1.0 197,730 - PGA1_262p01800 0.17 -0.2 197,730 - PGA1_262p01800 0.17 -0.1 197,813 + PGA1_262p01800 0.26 +0.6 198,074 + PGA1_262p01800 0.53 +1.2 198,074 + PGA1_262p01800 0.53 +0.9 198,082 - PGA1_262p01800 0.53 +1.2 198,089 - PGA1_262p01800 0.54 -0.4 198,240 + PGA1_262p01800 0.70 +0.2 198,240 + PGA1_262p01800 0.70 +0.6 198,240 + PGA1_262p01800 0.70 +0.7 198,274 + PGA1_262p01800 0.73 +0.2 198,279 + PGA1_262p01800 0.74 -0.1 198,362 - PGA1_262p01800 0.82 -0.4 198,448 + -0.1 198,456 - -0.7 198,470 + +0.7 198,479 + +0.6 198,479 + -0.2 198,525 + -1.1 198,555 - +0.8
Or see this region's nucleotide sequence