Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18390

Experiment: Glycine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c18360 and PGA1_c18370 are separated by 3 nucleotidesPGA1_c18370 and PGA1_c18380 are separated by 2 nucleotidesPGA1_c18380 and PGA1_c18390 overlap by 1 nucleotidesPGA1_c18390 and PGA1_c18400 are separated by 74 nucleotides PGA1_c18360: PGA1_c18360 - hypothetical protein, at 1,917,048 to 1,917,581 _c18360 PGA1_c18370: PGA1_c18370 - hypothetical protein, at 1,917,585 to 1,918,136 _c18370 PGA1_c18380: PGA1_c18380 - Phage Head-Tail Attachment., at 1,918,139 to 1,918,450 _c18380 PGA1_c18390: PGA1_c18390 - hypothetical protein, at 1,918,450 to 1,918,680 _c18390 PGA1_c18400: PGA1_c18400 - peptidase U35, phage prohead HK97-like protein, at 1,918,755 to 1,920,785 _c18400 Position (kb) 1918 1919Strain fitness (log2 ratio) -1 0 1at 1917.484 kb on + strand, within PGA1_c18360at 1917.484 kb on + strand, within PGA1_c18360at 1917.492 kb on + strand, within PGA1_c18360at 1917.492 kb on - strand, within PGA1_c18360at 1917.500 kb on - strand, within PGA1_c18360at 1917.500 kb on - strand, within PGA1_c18360at 1917.507 kb on - strand, within PGA1_c18360at 1917.511 kb on + strand, within PGA1_c18360at 1917.519 kb on - strand, within PGA1_c18360at 1917.582 kb on + strandat 1917.590 kb on - strandat 1917.590 kb on - strandat 1917.590 kb on - strandat 1917.590 kb on - strandat 1917.623 kb on - strandat 1917.687 kb on + strand, within PGA1_c18370at 1917.731 kb on + strand, within PGA1_c18370at 1917.736 kb on + strand, within PGA1_c18370at 1917.739 kb on - strand, within PGA1_c18370at 1917.751 kb on - strand, within PGA1_c18370at 1917.751 kb on - strand, within PGA1_c18370at 1917.777 kb on + strand, within PGA1_c18370at 1917.783 kb on + strand, within PGA1_c18370at 1917.807 kb on + strand, within PGA1_c18370at 1917.810 kb on - strand, within PGA1_c18370at 1917.830 kb on - strand, within PGA1_c18370at 1917.926 kb on - strand, within PGA1_c18370at 1917.977 kb on + strand, within PGA1_c18370at 1917.977 kb on + strand, within PGA1_c18370at 1917.977 kb on + strand, within PGA1_c18370at 1918.020 kb on + strand, within PGA1_c18370at 1918.130 kb on + strandat 1918.138 kb on - strandat 1918.154 kb on + strandat 1918.162 kb on - strandat 1918.162 kb on - strandat 1918.162 kb on - strandat 1918.162 kb on - strandat 1918.162 kb on - strandat 1918.181 kb on + strand, within PGA1_c18380at 1918.201 kb on - strand, within PGA1_c18380at 1918.285 kb on + strand, within PGA1_c18380at 1918.429 kb on + strandat 1918.454 kb on - strandat 1918.479 kb on - strand, within PGA1_c18390at 1918.525 kb on + strand, within PGA1_c18390at 1918.550 kb on + strand, within PGA1_c18390at 1918.560 kb on + strand, within PGA1_c18390at 1918.568 kb on - strand, within PGA1_c18390at 1918.568 kb on - strand, within PGA1_c18390at 1918.568 kb on - strand, within PGA1_c18390at 1918.568 kb on - strand, within PGA1_c18390at 1918.700 kb on - strandat 1918.700 kb on - strandat 1918.700 kb on - strandat 1918.733 kb on + strandat 1918.781 kb on + strandat 1918.781 kb on + strandat 1918.874 kb on + strandat 1919.040 kb on - strand, within PGA1_c18400at 1919.042 kb on - strand, within PGA1_c18400at 1919.194 kb on + strand, within PGA1_c18400at 1919.194 kb on - strand, within PGA1_c18400at 1919.202 kb on - strand, within PGA1_c18400at 1919.239 kb on + strand, within PGA1_c18400at 1919.239 kb on + strand, within PGA1_c18400at 1919.256 kb on + strand, within PGA1_c18400at 1919.264 kb on - strand, within PGA1_c18400at 1919.264 kb on - strand, within PGA1_c18400at 1919.264 kb on - strand, within PGA1_c18400at 1919.264 kb on - strand, within PGA1_c18400at 1919.276 kb on - strand, within PGA1_c18400at 1919.285 kb on + strand, within PGA1_c18400at 1919.290 kb on + strand, within PGA1_c18400at 1919.290 kb on + strand, within PGA1_c18400at 1919.290 kb on + strand, within PGA1_c18400at 1919.314 kb on + strand, within PGA1_c18400at 1919.324 kb on + strand, within PGA1_c18400at 1919.324 kb on + strand, within PGA1_c18400at 1919.332 kb on - strand, within PGA1_c18400at 1919.373 kb on - strand, within PGA1_c18400at 1919.384 kb on - strand, within PGA1_c18400at 1919.390 kb on - strand, within PGA1_c18400at 1919.393 kb on + strand, within PGA1_c18400at 1919.484 kb on - strand, within PGA1_c18400at 1919.490 kb on + strand, within PGA1_c18400at 1919.490 kb on + strand, within PGA1_c18400at 1919.604 kb on - strand, within PGA1_c18400at 1919.617 kb on + strand, within PGA1_c18400at 1919.625 kb on - strand, within PGA1_c18400

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (C)
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1,917,484 + PGA1_c18360 0.82 +0.6
1,917,484 + PGA1_c18360 0.82 +0.2
1,917,492 + PGA1_c18360 0.83 -0.9
1,917,492 - PGA1_c18360 0.83 -0.3
1,917,500 - PGA1_c18360 0.85 -0.3
1,917,500 - PGA1_c18360 0.85 -0.6
1,917,507 - PGA1_c18360 0.86 +0.0
1,917,511 + PGA1_c18360 0.87 -0.0
1,917,519 - PGA1_c18360 0.88 +0.6
1,917,582 + -0.1
1,917,590 - -0.6
1,917,590 - -0.9
1,917,590 - -0.1
1,917,590 - +0.2
1,917,623 - +0.1
1,917,687 + PGA1_c18370 0.18 -0.2
1,917,731 + PGA1_c18370 0.26 +0.3
1,917,736 + PGA1_c18370 0.27 -0.4
1,917,739 - PGA1_c18370 0.28 +0.1
1,917,751 - PGA1_c18370 0.30 +0.7
1,917,751 - PGA1_c18370 0.30 +0.6
1,917,777 + PGA1_c18370 0.35 +0.0
1,917,783 + PGA1_c18370 0.36 -0.8
1,917,807 + PGA1_c18370 0.40 -0.0
1,917,810 - PGA1_c18370 0.41 +0.0
1,917,830 - PGA1_c18370 0.44 -0.4
1,917,926 - PGA1_c18370 0.62 +1.0
1,917,977 + PGA1_c18370 0.71 +0.0
1,917,977 + PGA1_c18370 0.71 -0.1
1,917,977 + PGA1_c18370 0.71 +0.6
1,918,020 + PGA1_c18370 0.79 -0.2
1,918,130 + +0.9
1,918,138 - -0.1
1,918,154 + -0.4
1,918,162 - -0.5
1,918,162 - -0.2
1,918,162 - -0.2
1,918,162 - +0.4
1,918,162 - +0.5
1,918,181 + PGA1_c18380 0.13 +0.5
1,918,201 - PGA1_c18380 0.20 +1.6
1,918,285 + PGA1_c18380 0.47 +1.4
1,918,429 + -0.7
1,918,454 - +1.1
1,918,479 - PGA1_c18390 0.13 +0.6
1,918,525 + PGA1_c18390 0.32 +0.1
1,918,550 + PGA1_c18390 0.43 +0.9
1,918,560 + PGA1_c18390 0.48 +0.3
1,918,568 - PGA1_c18390 0.51 +0.4
1,918,568 - PGA1_c18390 0.51 -0.1
1,918,568 - PGA1_c18390 0.51 -0.0
1,918,568 - PGA1_c18390 0.51 +0.9
1,918,700 - -0.1
1,918,700 - +0.5
1,918,700 - +0.6
1,918,733 + -0.0
1,918,781 + +0.5
1,918,781 + +0.1
1,918,874 + -0.9
1,919,040 - PGA1_c18400 0.14 +0.1
1,919,042 - PGA1_c18400 0.14 +0.2
1,919,194 + PGA1_c18400 0.22 +0.2
1,919,194 - PGA1_c18400 0.22 -0.1
1,919,202 - PGA1_c18400 0.22 -1.3
1,919,239 + PGA1_c18400 0.24 +0.2
1,919,239 + PGA1_c18400 0.24 +0.4
1,919,256 + PGA1_c18400 0.25 -0.1
1,919,264 - PGA1_c18400 0.25 -0.2
1,919,264 - PGA1_c18400 0.25 +0.5
1,919,264 - PGA1_c18400 0.25 +0.3
1,919,264 - PGA1_c18400 0.25 +0.6
1,919,276 - PGA1_c18400 0.26 +0.1
1,919,285 + PGA1_c18400 0.26 -0.5
1,919,290 + PGA1_c18400 0.26 -1.3
1,919,290 + PGA1_c18400 0.26 -0.5
1,919,290 + PGA1_c18400 0.26 -0.7
1,919,314 + PGA1_c18400 0.28 +0.7
1,919,324 + PGA1_c18400 0.28 -0.7
1,919,324 + PGA1_c18400 0.28 +0.4
1,919,332 - PGA1_c18400 0.28 +0.9
1,919,373 - PGA1_c18400 0.30 +0.1
1,919,384 - PGA1_c18400 0.31 -1.3
1,919,390 - PGA1_c18400 0.31 +0.3
1,919,393 + PGA1_c18400 0.31 -0.1
1,919,484 - PGA1_c18400 0.36 +0.1
1,919,490 + PGA1_c18400 0.36 +0.5
1,919,490 + PGA1_c18400 0.36 -0.9
1,919,604 - PGA1_c18400 0.42 -0.3
1,919,617 + PGA1_c18400 0.42 +0.5
1,919,625 - PGA1_c18400 0.43 +0.2

Or see this region's nucleotide sequence