Experiment: PYE 4C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00248 and CCNA_00249 are separated by 56 nucleotides CCNA_00249 and CCNA_00250 are separated by 80 nucleotides CCNA_00250 and CCNA_00251 are separated by 48 nucleotides CCNA_00251 and CCNA_00252 are separated by 111 nucleotides
CCNA_00248: CCNA_00248 - sensor histidine protein kinase, at 259,514 to 260,914
_00248
CCNA_00249: CCNA_00249 - SCO1/SenC family protein, at 260,971 to 261,561
_00249
CCNA_00250: CCNA_00250 - poly(3-hydroxyalkanoate) depolymerase, at 261,642 to 262,904
_00250
CCNA_00251: CCNA_00251 - zinc metalloprotease, at 262,953 to 263,672
_00251
CCNA_00252: CCNA_00252 - multimodular transpeptidase-transglycosylase PbpX, at 263,784 to 265,745
_00252
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 260.654 kb on + strand, within CCNA_00248 at 260.654 kb on + strand, within CCNA_00248 at 260.671 kb on + strand, within CCNA_00248 at 260.679 kb on - strand, within CCNA_00248 at 260.679 kb on - strand, within CCNA_00248 at 260.679 kb on - strand, within CCNA_00248 at 260.679 kb on - strand, within CCNA_00248 at 260.685 kb on + strand, within CCNA_00248 at 260.686 kb on - strand, within CCNA_00248 at 260.693 kb on - strand, within CCNA_00248 at 260.718 kb on + strand, within CCNA_00248 at 260.723 kb on + strand, within CCNA_00248 at 260.723 kb on + strand, within CCNA_00248 at 260.731 kb on - strand, within CCNA_00248 at 260.731 kb on - strand, within CCNA_00248 at 260.731 kb on - strand, within CCNA_00248 at 260.743 kb on - strand, within CCNA_00248 at 260.759 kb on + strand at 260.803 kb on + strand at 260.804 kb on + strand at 260.806 kb on - strand at 260.811 kb on - strand at 260.812 kb on - strand at 260.814 kb on + strand at 260.814 kb on + strand at 260.814 kb on + strand at 260.819 kb on + strand at 260.822 kb on - strand at 260.822 kb on - strand at 260.861 kb on - strand at 260.866 kb on - strand at 260.927 kb on + strand at 260.927 kb on + strand at 260.935 kb on - strand at 260.935 kb on - strand at 260.984 kb on + strand at 260.989 kb on + strand at 260.992 kb on - strand at 261.015 kb on - strand at 261.026 kb on + strand at 261.033 kb on - strand, within CCNA_00249 at 261.038 kb on + strand, within CCNA_00249 at 261.067 kb on - strand, within CCNA_00249 at 261.142 kb on + strand, within CCNA_00249 at 261.142 kb on + strand, within CCNA_00249 at 261.174 kb on - strand, within CCNA_00249 at 261.185 kb on + strand, within CCNA_00249 at 261.187 kb on - strand, within CCNA_00249 at 261.191 kb on + strand, within CCNA_00249 at 261.191 kb on + strand, within CCNA_00249 at 261.191 kb on + strand, within CCNA_00249 at 261.191 kb on + strand, within CCNA_00249 at 261.199 kb on - strand, within CCNA_00249 at 261.199 kb on - strand, within CCNA_00249 at 261.202 kb on + strand, within CCNA_00249 at 261.202 kb on + strand, within CCNA_00249 at 261.202 kb on + strand, within CCNA_00249 at 261.202 kb on + strand, within CCNA_00249 at 261.243 kb on + strand, within CCNA_00249 at 261.251 kb on - strand, within CCNA_00249 at 261.252 kb on + strand, within CCNA_00249 at 261.283 kb on + strand, within CCNA_00249 at 261.291 kb on - strand, within CCNA_00249 at 261.301 kb on - strand, within CCNA_00249 at 261.303 kb on + strand, within CCNA_00249 at 261.311 kb on - strand, within CCNA_00249 at 261.317 kb on - strand, within CCNA_00249 at 261.317 kb on - strand, within CCNA_00249 at 261.352 kb on - strand, within CCNA_00249 at 261.354 kb on + strand, within CCNA_00249 at 261.362 kb on + strand, within CCNA_00249 at 261.372 kb on + strand, within CCNA_00249 at 261.390 kb on + strand, within CCNA_00249 at 261.390 kb on + strand, within CCNA_00249 at 261.393 kb on + strand, within CCNA_00249 at 261.398 kb on - strand, within CCNA_00249 at 261.414 kb on + strand, within CCNA_00249 at 261.415 kb on + strand, within CCNA_00249 at 261.424 kb on + strand, within CCNA_00249 at 261.429 kb on + strand, within CCNA_00249 at 261.429 kb on + strand, within CCNA_00249 at 261.429 kb on + strand, within CCNA_00249 at 261.437 kb on + strand, within CCNA_00249 at 261.437 kb on + strand, within CCNA_00249 at 261.441 kb on + strand, within CCNA_00249 at 261.442 kb on - strand, within CCNA_00249 at 261.499 kb on + strand, within CCNA_00249 at 261.500 kb on + strand, within CCNA_00249 at 261.500 kb on + strand, within CCNA_00249 at 261.508 kb on - strand at 261.508 kb on - strand at 261.508 kb on - strand at 261.508 kb on - strand at 261.534 kb on + strand at 261.542 kb on - strand at 261.564 kb on - strand at 261.591 kb on - strand at 261.608 kb on + strand at 261.637 kb on + strand at 261.644 kb on + strand at 261.644 kb on + strand at 261.644 kb on + strand at 261.644 kb on + strand at 261.644 kb on + strand at 261.652 kb on - strand at 261.652 kb on - strand at 261.652 kb on - strand at 261.664 kb on - strand at 261.676 kb on + strand at 261.684 kb on + strand at 261.684 kb on + strand at 261.692 kb on - strand at 261.692 kb on - strand at 261.716 kb on + strand at 261.811 kb on + strand, within CCNA_00250 at 261.814 kb on - strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.871 kb on + strand, within CCNA_00250 at 261.892 kb on + strand, within CCNA_00250 at 261.892 kb on + strand, within CCNA_00250 at 261.892 kb on + strand, within CCNA_00250 at 261.962 kb on + strand, within CCNA_00250 at 261.982 kb on - strand, within CCNA_00250 at 261.999 kb on - strand, within CCNA_00250 at 262.024 kb on - strand, within CCNA_00250 at 262.025 kb on + strand, within CCNA_00250 at 262.026 kb on + strand, within CCNA_00250 at 262.026 kb on + strand, within CCNA_00250 at 262.026 kb on + strand, within CCNA_00250 at 262.034 kb on - strand, within CCNA_00250 at 262.034 kb on - strand, within CCNA_00250 at 262.045 kb on + strand, within CCNA_00250 at 262.118 kb on + strand, within CCNA_00250 at 262.123 kb on + strand, within CCNA_00250 at 262.159 kb on + strand, within CCNA_00250 at 262.164 kb on + strand, within CCNA_00250 at 262.172 kb on + strand, within CCNA_00250 at 262.271 kb on - strand, within CCNA_00250 at 262.317 kb on - strand, within CCNA_00250 at 262.412 kb on - strand, within CCNA_00250 at 262.447 kb on - strand, within CCNA_00250 at 262.465 kb on - strand, within CCNA_00250 at 262.529 kb on + strand, within CCNA_00250 at 262.537 kb on - strand, within CCNA_00250 at 262.571 kb on + strand, within CCNA_00250 at 262.624 kb on - strand, within CCNA_00250 at 262.654 kb on + strand, within CCNA_00250 at 262.654 kb on + strand, within CCNA_00250 at 262.657 kb on - strand, within CCNA_00250 at 262.667 kb on + strand, within CCNA_00250 at 262.680 kb on - strand, within CCNA_00250 at 262.685 kb on - strand, within CCNA_00250 at 262.695 kb on + strand, within CCNA_00250 at 262.722 kb on + strand, within CCNA_00250 at 262.722 kb on + strand, within CCNA_00250 at 262.722 kb on + strand, within CCNA_00250 at 262.722 kb on + strand, within CCNA_00250 at 262.727 kb on + strand, within CCNA_00250 at 262.727 kb on + strand, within CCNA_00250 at 262.730 kb on - strand, within CCNA_00250 at 262.735 kb on - strand, within CCNA_00250 at 262.735 kb on - strand, within CCNA_00250 at 262.735 kb on - strand, within CCNA_00250 at 262.769 kb on + strand, within CCNA_00250 at 262.778 kb on + strand at 262.791 kb on - strand at 262.814 kb on + strand at 262.849 kb on - strand at 262.906 kb on - strand at 262.923 kb on - strand at 262.950 kb on - strand at 262.950 kb on - strand at 262.968 kb on + strand at 262.968 kb on + strand at 263.016 kb on + strand at 263.021 kb on + strand at 263.029 kb on - strand, within CCNA_00251 at 263.069 kb on + strand, within CCNA_00251 at 263.074 kb on + strand, within CCNA_00251 at 263.095 kb on + strand, within CCNA_00251 at 263.101 kb on + strand, within CCNA_00251 at 263.101 kb on - strand, within CCNA_00251 at 263.146 kb on - strand, within CCNA_00251 at 263.204 kb on - strand, within CCNA_00251 at 263.216 kb on - strand, within CCNA_00251 at 263.294 kb on - strand, within CCNA_00251 at 263.316 kb on - strand, within CCNA_00251 at 263.333 kb on + strand, within CCNA_00251 at 263.340 kb on + strand, within CCNA_00251 at 263.340 kb on + strand, within CCNA_00251 at 263.348 kb on - strand, within CCNA_00251 at 263.373 kb on - strand, within CCNA_00251 at 263.382 kb on + strand, within CCNA_00251 at 263.382 kb on + strand, within CCNA_00251 at 263.382 kb on + strand, within CCNA_00251 at 263.383 kb on + strand, within CCNA_00251 at 263.390 kb on - strand, within CCNA_00251 at 263.446 kb on + strand, within CCNA_00251 at 263.455 kb on - strand, within CCNA_00251 at 263.530 kb on + strand, within CCNA_00251 at 263.547 kb on + strand, within CCNA_00251 at 263.552 kb on + strand, within CCNA_00251 at 263.555 kb on - strand, within CCNA_00251 at 263.576 kb on + strand, within CCNA_00251 at 263.578 kb on + strand, within CCNA_00251 at 263.665 kb on + strand at 263.698 kb on + strand at 263.711 kb on - strand at 263.718 kb on - strand at 263.720 kb on + strand at 263.728 kb on - strand at 263.728 kb on - strand at 263.732 kb on + strand at 263.736 kb on + strand at 263.739 kb on - strand at 263.759 kb on + strand at 263.768 kb on - strand at 263.785 kb on - strand at 263.790 kb on - strand at 263.806 kb on - strand at 263.834 kb on - strand at 263.889 kb on - strand at 263.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C survival rep3 12 days remove 260,654 + CCNA_00248 0.81 -0.8 260,654 + CCNA_00248 0.81 -0.7 260,671 + CCNA_00248 0.83 -0.6 260,679 - CCNA_00248 0.83 -0.0 260,679 - CCNA_00248 0.83 -0.5 260,679 - CCNA_00248 0.83 +0.2 260,679 - CCNA_00248 0.83 -1.0 260,685 + CCNA_00248 0.84 +0.1 260,686 - CCNA_00248 0.84 -0.1 260,693 - CCNA_00248 0.84 -0.6 260,718 + CCNA_00248 0.86 -0.0 260,723 + CCNA_00248 0.86 +3.0 260,723 + CCNA_00248 0.86 -1.3 260,731 - CCNA_00248 0.87 -0.2 260,731 - CCNA_00248 0.87 +1.0 260,731 - CCNA_00248 0.87 +1.4 260,743 - CCNA_00248 0.88 +0.1 260,759 + -0.3 260,803 + -0.7 260,804 + -0.6 260,806 - +0.3 260,811 - +0.3 260,812 - +0.3 260,814 + -1.0 260,814 + -0.8 260,814 + -1.5 260,819 + -1.2 260,822 - -0.3 260,822 - +0.4 260,861 - -0.9 260,866 - +0.4 260,927 + -0.2 260,927 + -0.1 260,935 - +0.3 260,935 - +1.0 260,984 + +0.5 260,989 + -0.6 260,992 - +0.8 261,015 - +0.2 261,026 + -0.1 261,033 - CCNA_00249 0.10 -1.8 261,038 + CCNA_00249 0.11 +0.5 261,067 - CCNA_00249 0.16 +1.0 261,142 + CCNA_00249 0.29 -0.7 261,142 + CCNA_00249 0.29 -0.1 261,174 - CCNA_00249 0.34 -2.1 261,185 + CCNA_00249 0.36 -0.3 261,187 - CCNA_00249 0.37 -1.6 261,191 + CCNA_00249 0.37 -0.8 261,191 + CCNA_00249 0.37 -0.4 261,191 + CCNA_00249 0.37 +0.3 261,191 + CCNA_00249 0.37 -0.5 261,199 - CCNA_00249 0.39 +0.4 261,199 - CCNA_00249 0.39 -1.9 261,202 + CCNA_00249 0.39 -0.4 261,202 + CCNA_00249 0.39 -0.9 261,202 + CCNA_00249 0.39 -0.7 261,202 + CCNA_00249 0.39 +1.1 261,243 + CCNA_00249 0.46 -1.3 261,251 - CCNA_00249 0.47 -0.9 261,252 + CCNA_00249 0.48 -0.7 261,283 + CCNA_00249 0.53 -0.4 261,291 - CCNA_00249 0.54 -1.2 261,301 - CCNA_00249 0.56 -1.5 261,303 + CCNA_00249 0.56 +0.1 261,311 - CCNA_00249 0.58 +1.8 261,317 - CCNA_00249 0.59 -1.5 261,317 - CCNA_00249 0.59 -1.2 261,352 - CCNA_00249 0.64 -0.6 261,354 + CCNA_00249 0.65 +0.2 261,362 + CCNA_00249 0.66 -0.6 261,372 + CCNA_00249 0.68 +0.5 261,390 + CCNA_00249 0.71 +0.2 261,390 + CCNA_00249 0.71 -0.3 261,393 + CCNA_00249 0.71 +0.2 261,398 - CCNA_00249 0.72 -1.3 261,414 + CCNA_00249 0.75 -0.0 261,415 + CCNA_00249 0.75 -0.5 261,424 + CCNA_00249 0.77 +0.3 261,429 + CCNA_00249 0.77 -0.3 261,429 + CCNA_00249 0.77 +0.4 261,429 + CCNA_00249 0.77 -0.3 261,437 + CCNA_00249 0.79 -0.2 261,437 + CCNA_00249 0.79 -0.9 261,441 + CCNA_00249 0.80 +0.3 261,442 - CCNA_00249 0.80 +2.0 261,499 + CCNA_00249 0.89 +0.6 261,500 + CCNA_00249 0.90 -2.2 261,500 + CCNA_00249 0.90 +0.5 261,508 - +1.2 261,508 - +0.2 261,508 - +0.2 261,508 - -0.5 261,534 + -0.4 261,542 - +0.8 261,564 - -2.4 261,591 - +0.8 261,608 + -0.4 261,637 + +0.3 261,644 + -0.3 261,644 + -0.2 261,644 + -0.2 261,644 + -0.9 261,644 + -0.1 261,652 - +0.3 261,652 - -1.2 261,652 - +0.4 261,664 - -0.3 261,676 + -0.6 261,684 + -0.3 261,684 + -1.2 261,692 - +0.5 261,692 - -0.6 261,716 + +0.2 261,811 + CCNA_00250 0.13 +0.3 261,814 - CCNA_00250 0.14 -0.0 261,839 + CCNA_00250 0.16 -0.2 261,839 + CCNA_00250 0.16 -0.4 261,839 + CCNA_00250 0.16 +0.2 261,839 + CCNA_00250 0.16 -0.3 261,839 + CCNA_00250 0.16 -0.1 261,839 + CCNA_00250 0.16 -0.8 261,839 + CCNA_00250 0.16 +2.0 261,839 + CCNA_00250 0.16 -0.2 261,839 + CCNA_00250 0.16 -0.2 261,847 - CCNA_00250 0.16 -1.9 261,847 - CCNA_00250 0.16 -0.8 261,847 - CCNA_00250 0.16 +0.8 261,847 - CCNA_00250 0.16 -0.8 261,847 - CCNA_00250 0.16 +0.4 261,871 + CCNA_00250 0.18 -0.1 261,892 + CCNA_00250 0.20 -0.1 261,892 + CCNA_00250 0.20 -0.6 261,892 + CCNA_00250 0.20 -1.5 261,962 + CCNA_00250 0.25 +0.3 261,982 - CCNA_00250 0.27 -0.6 261,999 - CCNA_00250 0.28 -0.1 262,024 - CCNA_00250 0.30 -0.8 262,025 + CCNA_00250 0.30 -0.4 262,026 + CCNA_00250 0.30 -1.4 262,026 + CCNA_00250 0.30 -0.7 262,026 + CCNA_00250 0.30 -0.5 262,034 - CCNA_00250 0.31 -0.2 262,034 - CCNA_00250 0.31 +0.6 262,045 + CCNA_00250 0.32 -1.7 262,118 + CCNA_00250 0.38 -0.3 262,123 + CCNA_00250 0.38 +0.5 262,159 + CCNA_00250 0.41 -0.3 262,164 + CCNA_00250 0.41 -0.4 262,172 + CCNA_00250 0.42 +0.5 262,271 - CCNA_00250 0.50 +0.3 262,317 - CCNA_00250 0.53 -0.2 262,412 - CCNA_00250 0.61 -0.0 262,447 - CCNA_00250 0.64 -1.7 262,465 - CCNA_00250 0.65 -0.8 262,529 + CCNA_00250 0.70 -0.9 262,537 - CCNA_00250 0.71 +0.5 262,571 + CCNA_00250 0.74 +0.1 262,624 - CCNA_00250 0.78 +0.4 262,654 + CCNA_00250 0.80 +0.9 262,654 + CCNA_00250 0.80 -0.6 262,657 - CCNA_00250 0.80 -2.3 262,667 + CCNA_00250 0.81 -1.7 262,680 - CCNA_00250 0.82 +1.2 262,685 - CCNA_00250 0.83 -0.3 262,695 + CCNA_00250 0.83 -0.0 262,722 + CCNA_00250 0.86 +0.3 262,722 + CCNA_00250 0.86 -0.5 262,722 + CCNA_00250 0.86 +0.6 262,722 + CCNA_00250 0.86 -0.9 262,727 + CCNA_00250 0.86 -0.5 262,727 + CCNA_00250 0.86 -0.1 262,730 - CCNA_00250 0.86 -1.7 262,735 - CCNA_00250 0.87 -0.6 262,735 - CCNA_00250 0.87 +1.0 262,735 - CCNA_00250 0.87 -1.6 262,769 + CCNA_00250 0.89 +0.3 262,778 + -0.1 262,791 - +2.0 262,814 + -0.9 262,849 - -0.7 262,906 - +0.4 262,923 - -0.8 262,950 - +0.3 262,950 - -1.0 262,968 + +0.6 262,968 + +0.6 263,016 + -0.4 263,021 + -0.5 263,029 - CCNA_00251 0.11 +0.3 263,069 + CCNA_00251 0.16 -0.8 263,074 + CCNA_00251 0.17 -0.6 263,095 + CCNA_00251 0.20 -0.2 263,101 + CCNA_00251 0.21 -0.9 263,101 - CCNA_00251 0.21 -0.0 263,146 - CCNA_00251 0.27 -0.8 263,204 - CCNA_00251 0.35 -0.9 263,216 - CCNA_00251 0.37 -0.9 263,294 - CCNA_00251 0.47 -0.9 263,316 - CCNA_00251 0.50 -0.2 263,333 + CCNA_00251 0.53 -0.1 263,340 + CCNA_00251 0.54 -0.5 263,340 + CCNA_00251 0.54 -0.6 263,348 - CCNA_00251 0.55 -0.1 263,373 - CCNA_00251 0.58 -0.4 263,382 + CCNA_00251 0.60 -1.5 263,382 + CCNA_00251 0.60 +0.1 263,382 + CCNA_00251 0.60 -0.6 263,383 + CCNA_00251 0.60 -0.7 263,390 - CCNA_00251 0.61 -1.3 263,446 + CCNA_00251 0.68 +0.3 263,455 - CCNA_00251 0.70 -0.4 263,530 + CCNA_00251 0.80 -0.8 263,547 + CCNA_00251 0.82 -1.1 263,552 + CCNA_00251 0.83 -0.0 263,555 - CCNA_00251 0.84 +0.5 263,576 + CCNA_00251 0.87 -0.7 263,578 + CCNA_00251 0.87 +0.4 263,665 + -1.0 263,698 + +0.4 263,711 - -1.2 263,718 - +0.0 263,720 + +0.4 263,728 - +0.1 263,728 - +0.1 263,732 + +0.2 263,736 + -0.0 263,739 - +0.5 263,759 + -0.5 263,768 - +0.2 263,785 - +0.5 263,790 - -0.1 263,806 - +0.0 263,834 - -0.0 263,889 - -0.5 263,904 - -0.4
Or see this region's nucleotide sequence