Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27365 and BWI76_RS27370 are separated by 175 nucleotides BWI76_RS27370 and BWI76_RS27375 overlap by 23 nucleotides BWI76_RS27375 and BWI76_RS27380 are separated by 174 nucleotides
BWI76_RS27365: BWI76_RS27365 - hypothetical protein, at 5,679,015 to 5,679,680
_RS27365
BWI76_RS27370: BWI76_RS27370 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 5,679,856 to 5,681,067
_RS27370
BWI76_RS27375: BWI76_RS27375 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 5,681,045 to 5,681,503
_RS27375
BWI76_RS27380: BWI76_RS27380 - nucleoid occlusion factor SlmA, at 5,681,678 to 5,682,274
_RS27380
Position (kb)
5679
5680
5681
5682 Strain fitness (log2 ratio)
-1
0
1 at 5679.146 kb on + strand, within BWI76_RS27365 at 5679.146 kb on + strand, within BWI76_RS27365 at 5679.188 kb on - strand, within BWI76_RS27365 at 5679.397 kb on + strand, within BWI76_RS27365 at 5679.447 kb on - strand, within BWI76_RS27365 at 5679.480 kb on - strand, within BWI76_RS27365 at 5679.605 kb on + strand, within BWI76_RS27365 at 5679.711 kb on - strand at 5679.755 kb on + strand at 5679.816 kb on - strand at 5681.619 kb on - strand at 5681.767 kb on + strand, within BWI76_RS27380 at 5681.770 kb on + strand, within BWI76_RS27380
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 5,679,146 + BWI76_RS27365 0.20 -0.1 5,679,146 + BWI76_RS27365 0.20 +0.2 5,679,188 - BWI76_RS27365 0.26 +1.1 5,679,397 + BWI76_RS27365 0.57 -0.5 5,679,447 - BWI76_RS27365 0.65 +1.1 5,679,480 - BWI76_RS27365 0.70 -1.0 5,679,605 + BWI76_RS27365 0.89 +1.1 5,679,711 - +0.5 5,679,755 + +0.4 5,679,816 - -0.9 5,681,619 - -1.5 5,681,767 + BWI76_RS27380 0.15 +0.1 5,681,770 + BWI76_RS27380 0.15 -0.4
Or see this region's nucleotide sequence