Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23005

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23000 and BWI76_RS23005 are separated by 74 nucleotidesBWI76_RS23005 and BWI76_RS23010 overlap by 7 nucleotides BWI76_RS23000: BWI76_RS23000 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,798,846 to 4,799,901 _RS23000 BWI76_RS23005: BWI76_RS23005 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 4,799,976 to 4,800,521 _RS23005 BWI76_RS23010: BWI76_RS23010 - cobyric acid synthase CobQ, at 4,800,515 to 4,802,038 _RS23010 Position (kb) 4799 4800 4801Strain fitness (log2 ratio) -2 -1 0 1at 4799.001 kb on + strand, within BWI76_RS23000at 4799.051 kb on - strand, within BWI76_RS23000at 4799.933 kb on - strandat 4800.011 kb on + strandat 4800.013 kb on - strandat 4800.126 kb on - strand, within BWI76_RS23005at 4800.368 kb on - strand, within BWI76_RS23005at 4800.650 kb on + strandat 4800.697 kb on + strand, within BWI76_RS23010at 4800.891 kb on + strand, within BWI76_RS23010at 4800.920 kb on - strand, within BWI76_RS23010at 4800.938 kb on - strand, within BWI76_RS23010at 4801.437 kb on - strand, within BWI76_RS23010at 4801.464 kb on + strand, within BWI76_RS23010at 4801.464 kb on + strand, within BWI76_RS23010at 4801.472 kb on - strand, within BWI76_RS23010at 4801.472 kb on - strand, within BWI76_RS23010at 4801.472 kb on - strand, within BWI76_RS23010

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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4,799,001 + BWI76_RS23000 0.15 -0.3
4,799,051 - BWI76_RS23000 0.19 +0.8
4,799,933 - -2.3
4,800,011 + +0.1
4,800,013 - +0.6
4,800,126 - BWI76_RS23005 0.27 -2.0
4,800,368 - BWI76_RS23005 0.72 -0.8
4,800,650 + +0.1
4,800,697 + BWI76_RS23010 0.12 -0.3
4,800,891 + BWI76_RS23010 0.25 +0.7
4,800,920 - BWI76_RS23010 0.27 -1.3
4,800,938 - BWI76_RS23010 0.28 -1.5
4,801,437 - BWI76_RS23010 0.60 +0.2
4,801,464 + BWI76_RS23010 0.62 -0.2
4,801,464 + BWI76_RS23010 0.62 +0.8
4,801,472 - BWI76_RS23010 0.63 -0.3
4,801,472 - BWI76_RS23010 0.63 -0.2
4,801,472 - BWI76_RS23010 0.63 +0.4

Or see this region's nucleotide sequence