Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22830 and BWI76_RS22835 overlap by 4 nucleotides BWI76_RS22835 and BWI76_RS22840 overlap by 35 nucleotides BWI76_RS22840 and BWI76_RS22845 are separated by 399 nucleotides BWI76_RS22845 and BWI76_RS22850 are separated by 2 nucleotides
BWI76_RS22830: BWI76_RS22830 - glucarate dehydratase, at 4,763,919 to 4,765,259
_RS22830
BWI76_RS22835: BWI76_RS22835 - MFS transporter, at 4,765,256 to 4,766,614
_RS22835
BWI76_RS22840: BWI76_RS22840 - transposase, at 4,766,580 to 4,766,699
_RS22840
BWI76_RS22845: BWI76_RS22845 - flavodoxin, at 4,767,099 to 4,767,542
_RS22845
BWI76_RS22850: BWI76_RS22850 - tRNA pseudouridine synthase TruC, at 4,767,545 to 4,768,339
_RS22850
Position (kb)
4765
4766
4767 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4764.258 kb on + strand, within BWI76_RS22830 at 4764.511 kb on + strand, within BWI76_RS22830 at 4764.519 kb on - strand, within BWI76_RS22830 at 4764.647 kb on + strand, within BWI76_RS22830 at 4764.774 kb on + strand, within BWI76_RS22830 at 4764.802 kb on + strand, within BWI76_RS22830 at 4764.824 kb on - strand, within BWI76_RS22830 at 4764.886 kb on + strand, within BWI76_RS22830 at 4765.109 kb on + strand, within BWI76_RS22830 at 4765.227 kb on - strand at 4765.329 kb on + strand at 4765.330 kb on - strand at 4765.339 kb on + strand at 4765.361 kb on - strand at 4765.451 kb on - strand, within BWI76_RS22835 at 4765.785 kb on + strand, within BWI76_RS22835 at 4765.866 kb on + strand, within BWI76_RS22835 at 4765.938 kb on - strand, within BWI76_RS22835 at 4766.094 kb on - strand, within BWI76_RS22835 at 4766.145 kb on + strand, within BWI76_RS22835 at 4766.169 kb on + strand, within BWI76_RS22835 at 4766.495 kb on + strand at 4766.527 kb on - strand at 4766.553 kb on + strand at 4766.674 kb on - strand, within BWI76_RS22840 at 4766.769 kb on + strand at 4766.791 kb on + strand at 4766.832 kb on + strand at 4766.892 kb on - strand at 4766.995 kb on - strand at 4767.042 kb on + strand at 4767.083 kb on - strand at 4767.118 kb on - strand at 4767.212 kb on - strand, within BWI76_RS22845 at 4767.252 kb on - strand, within BWI76_RS22845 at 4767.291 kb on + strand, within BWI76_RS22845 at 4767.299 kb on - strand, within BWI76_RS22845 at 4767.335 kb on + strand, within BWI76_RS22845 at 4767.408 kb on + strand, within BWI76_RS22845
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 4,764,258 + BWI76_RS22830 0.25 -0.1 4,764,511 + BWI76_RS22830 0.44 +0.5 4,764,519 - BWI76_RS22830 0.45 +0.4 4,764,647 + BWI76_RS22830 0.54 -2.1 4,764,774 + BWI76_RS22830 0.64 -0.4 4,764,802 + BWI76_RS22830 0.66 +0.6 4,764,824 - BWI76_RS22830 0.67 +0.7 4,764,886 + BWI76_RS22830 0.72 -1.4 4,765,109 + BWI76_RS22830 0.89 +1.5 4,765,227 - -0.4 4,765,329 + +0.0 4,765,330 - +0.0 4,765,339 + -0.0 4,765,361 - -0.6 4,765,451 - BWI76_RS22835 0.14 -1.2 4,765,785 + BWI76_RS22835 0.39 -2.8 4,765,866 + BWI76_RS22835 0.45 +0.1 4,765,938 - BWI76_RS22835 0.50 -0.7 4,766,094 - BWI76_RS22835 0.62 -3.5 4,766,145 + BWI76_RS22835 0.65 -0.8 4,766,169 + BWI76_RS22835 0.67 -1.5 4,766,495 + -3.1 4,766,527 - -1.0 4,766,553 + +0.1 4,766,674 - BWI76_RS22840 0.78 -0.2 4,766,769 + -0.0 4,766,791 + -0.9 4,766,832 + +1.2 4,766,892 - +0.7 4,766,995 - +0.3 4,767,042 + +0.1 4,767,083 - +0.0 4,767,118 - -0.3 4,767,212 - BWI76_RS22845 0.25 -3.5 4,767,252 - BWI76_RS22845 0.34 -0.0 4,767,291 + BWI76_RS22845 0.43 +1.5 4,767,299 - BWI76_RS22845 0.45 +0.1 4,767,335 + BWI76_RS22845 0.53 -0.4 4,767,408 + BWI76_RS22845 0.70 +1.4
Or see this region's nucleotide sequence