Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18505

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18500 and BWI76_RS18505 are separated by 50 nucleotidesBWI76_RS18505 and BWI76_RS18510 are separated by 533 nucleotides BWI76_RS18500: BWI76_RS18500 - cation transporting ATPase E1-E2 family protein, at 3,835,699 to 3,838,386 _RS18500 BWI76_RS18505: BWI76_RS18505 - universal stress family protein, at 3,838,437 to 3,838,868 _RS18505 BWI76_RS18510: BWI76_RS18510 - membrane protein, at 3,839,402 to 3,840,487 _RS18510 Position (kb) 3838 3839Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3837.822 kb on + strand, within BWI76_RS18500at 3837.830 kb on - strand, within BWI76_RS18500at 3837.980 kb on - strand, within BWI76_RS18500at 3838.017 kb on + strand, within BWI76_RS18500at 3838.083 kb on - strand, within BWI76_RS18500at 3838.088 kb on - strand, within BWI76_RS18500at 3838.115 kb on - strand, within BWI76_RS18500at 3838.172 kb on - strandat 3838.223 kb on + strandat 3838.297 kb on + strandat 3838.423 kb on + strandat 3838.431 kb on - strandat 3838.431 kb on - strandat 3838.506 kb on + strand, within BWI76_RS18505at 3838.514 kb on - strand, within BWI76_RS18505at 3838.552 kb on - strand, within BWI76_RS18505at 3838.607 kb on - strand, within BWI76_RS18505at 3838.660 kb on - strand, within BWI76_RS18505at 3838.779 kb on + strand, within BWI76_RS18505at 3838.787 kb on - strand, within BWI76_RS18505at 3838.787 kb on - strand, within BWI76_RS18505at 3838.787 kb on - strand, within BWI76_RS18505at 3838.791 kb on + strand, within BWI76_RS18505at 3838.802 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.803 kb on + strand, within BWI76_RS18505at 3838.804 kb on + strand, within BWI76_RS18505at 3838.804 kb on + strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.811 kb on - strand, within BWI76_RS18505at 3838.812 kb on - strand, within BWI76_RS18505at 3838.817 kb on - strand, within BWI76_RS18505at 3838.911 kb on - strandat 3838.913 kb on + strandat 3838.922 kb on + strandat 3838.925 kb on - strandat 3838.926 kb on - strandat 3838.928 kb on - strandat 3838.933 kb on - strandat 3838.983 kb on - strandat 3838.988 kb on - strandat 3839.042 kb on + strandat 3839.058 kb on - strandat 3839.058 kb on - strandat 3839.133 kb on + strandat 3839.141 kb on + strandat 3839.173 kb on + strandat 3839.234 kb on + strandat 3839.242 kb on + strandat 3839.242 kb on + strandat 3839.242 kb on + strandat 3839.243 kb on - strandat 3839.250 kb on - strandat 3839.257 kb on + strandat 3839.267 kb on + strandat 3839.275 kb on - strandat 3839.279 kb on + strandat 3839.287 kb on - strandat 3839.354 kb on + strandat 3839.378 kb on + strandat 3839.378 kb on + strandat 3839.378 kb on + strandat 3839.378 kb on + strandat 3839.378 kb on + strandat 3839.378 kb on + strandat 3839.380 kb on + strandat 3839.380 kb on + strandat 3839.386 kb on - strandat 3839.386 kb on - strandat 3839.398 kb on - strandat 3839.400 kb on - strandat 3839.400 kb on - strandat 3839.501 kb on + strandat 3839.502 kb on - strandat 3839.526 kb on + strand, within BWI76_RS18510at 3839.526 kb on + strand, within BWI76_RS18510at 3839.567 kb on - strand, within BWI76_RS18510at 3839.670 kb on - strand, within BWI76_RS18510at 3839.678 kb on + strand, within BWI76_RS18510at 3839.812 kb on + strand, within BWI76_RS18510

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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3,837,822 + BWI76_RS18500 0.79 +1.7
3,837,830 - BWI76_RS18500 0.79 +0.9
3,837,980 - BWI76_RS18500 0.85 +1.7
3,838,017 + BWI76_RS18500 0.86 -0.6
3,838,083 - BWI76_RS18500 0.89 +0.4
3,838,088 - BWI76_RS18500 0.89 +0.2
3,838,115 - BWI76_RS18500 0.90 +0.6
3,838,172 - -0.2
3,838,223 + -0.3
3,838,297 + -2.5
3,838,423 + +0.7
3,838,431 - -0.5
3,838,431 - +1.5
3,838,506 + BWI76_RS18505 0.16 -2.0
3,838,514 - BWI76_RS18505 0.18 +0.7
3,838,552 - BWI76_RS18505 0.27 +0.5
3,838,607 - BWI76_RS18505 0.39 -0.6
3,838,660 - BWI76_RS18505 0.52 -3.3
3,838,779 + BWI76_RS18505 0.79 +2.2
3,838,787 - BWI76_RS18505 0.81 -1.0
3,838,787 - BWI76_RS18505 0.81 -0.2
3,838,787 - BWI76_RS18505 0.81 +0.2
3,838,791 + BWI76_RS18505 0.82 -1.5
3,838,802 + BWI76_RS18505 0.84 -0.5
3,838,803 + BWI76_RS18505 0.85 -1.7
3,838,803 + BWI76_RS18505 0.85 -1.2
3,838,803 + BWI76_RS18505 0.85 +0.5
3,838,803 + BWI76_RS18505 0.85 -1.9
3,838,803 + BWI76_RS18505 0.85 -2.1
3,838,803 + BWI76_RS18505 0.85 +1.7
3,838,803 + BWI76_RS18505 0.85 -1.5
3,838,803 + BWI76_RS18505 0.85 -0.1
3,838,803 + BWI76_RS18505 0.85 -0.2
3,838,803 + BWI76_RS18505 0.85 -2.5
3,838,803 + BWI76_RS18505 0.85 -3.5
3,838,803 + BWI76_RS18505 0.85 -0.3
3,838,803 + BWI76_RS18505 0.85 -0.2
3,838,803 + BWI76_RS18505 0.85 +2.4
3,838,804 + BWI76_RS18505 0.85 -1.1
3,838,804 + BWI76_RS18505 0.85 +1.8
3,838,811 - BWI76_RS18505 0.87 +0.8
3,838,811 - BWI76_RS18505 0.87 +0.2
3,838,811 - BWI76_RS18505 0.87 -2.5
3,838,811 - BWI76_RS18505 0.87 -2.5
3,838,811 - BWI76_RS18505 0.87 -0.2
3,838,811 - BWI76_RS18505 0.87 -3.0
3,838,811 - BWI76_RS18505 0.87 -1.3
3,838,811 - BWI76_RS18505 0.87 -1.6
3,838,811 - BWI76_RS18505 0.87 -2.2
3,838,811 - BWI76_RS18505 0.87 -0.5
3,838,811 - BWI76_RS18505 0.87 -3.2
3,838,811 - BWI76_RS18505 0.87 +1.2
3,838,811 - BWI76_RS18505 0.87 -1.0
3,838,811 - BWI76_RS18505 0.87 +0.9
3,838,812 - BWI76_RS18505 0.87 +0.6
3,838,817 - BWI76_RS18505 0.88 -1.6
3,838,911 - -1.7
3,838,913 + +0.6
3,838,922 + -0.2
3,838,925 - -0.5
3,838,926 - +0.9
3,838,928 - +2.2
3,838,933 - -0.9
3,838,983 - +1.0
3,838,988 - +1.1
3,839,042 + -0.7
3,839,058 - -0.4
3,839,058 - -1.6
3,839,133 + +0.2
3,839,141 + -0.2
3,839,173 + -1.7
3,839,234 + +0.7
3,839,242 + +0.3
3,839,242 + -0.9
3,839,242 + -0.3
3,839,243 - -0.2
3,839,250 - +0.5
3,839,257 + +1.0
3,839,267 + -0.4
3,839,275 - -0.5
3,839,279 + -0.4
3,839,287 - +0.7
3,839,354 + -0.4
3,839,378 + +0.6
3,839,378 + +1.2
3,839,378 + +1.9
3,839,378 + -3.2
3,839,378 + -0.1
3,839,378 + +0.3
3,839,380 + +0.3
3,839,380 + +0.2
3,839,386 - -1.6
3,839,386 - -2.3
3,839,398 - -1.6
3,839,400 - +1.2
3,839,400 - -0.3
3,839,501 + -1.2
3,839,502 - +2.3
3,839,526 + BWI76_RS18510 0.11 +0.8
3,839,526 + BWI76_RS18510 0.11 +0.7
3,839,567 - BWI76_RS18510 0.15 +0.2
3,839,670 - BWI76_RS18510 0.25 -1.0
3,839,678 + BWI76_RS18510 0.25 -0.4
3,839,812 + BWI76_RS18510 0.38 +0.8

Or see this region's nucleotide sequence