Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17845 and BWI76_RS17850 are separated by 525 nucleotides BWI76_RS17850 and BWI76_RS17855 overlap by 1 nucleotides
BWI76_RS17845: BWI76_RS17845 - extracellular solute-binding protein, at 3,709,020 to 3,710,309
_RS17845
BWI76_RS17850: BWI76_RS17850 - alginate lyase, at 3,710,835 to 3,712,073
_RS17850
BWI76_RS17855: BWI76_RS17855 - alginate lyase, at 3,712,073 to 3,714,103
_RS17855
Position (kb)
3710
3711
3712
3713 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3709.953 kb on + strand, within BWI76_RS17845 at 3709.961 kb on - strand, within BWI76_RS17845 at 3710.027 kb on - strand, within BWI76_RS17845 at 3710.108 kb on + strand, within BWI76_RS17845 at 3710.116 kb on - strand, within BWI76_RS17845 at 3710.214 kb on + strand at 3710.214 kb on + strand at 3710.214 kb on + strand at 3710.223 kb on + strand at 3710.230 kb on - strand at 3710.231 kb on - strand at 3710.239 kb on + strand at 3710.249 kb on + strand at 3710.249 kb on + strand at 3710.249 kb on + strand at 3710.249 kb on + strand at 3710.252 kb on - strand at 3710.252 kb on - strand at 3710.252 kb on - strand at 3710.255 kb on + strand at 3710.255 kb on + strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.257 kb on - strand at 3710.263 kb on - strand at 3710.263 kb on - strand at 3710.263 kb on - strand at 3710.263 kb on - strand at 3710.263 kb on - strand at 3710.263 kb on - strand at 3710.263 kb on - strand at 3710.263 kb on - strand at 3710.307 kb on + strand at 3710.307 kb on + strand at 3710.313 kb on - strand at 3710.385 kb on + strand at 3710.701 kb on + strand at 3710.701 kb on + strand at 3710.709 kb on - strand at 3710.818 kb on + strand at 3710.833 kb on - strand at 3710.839 kb on + strand at 3710.839 kb on + strand at 3710.839 kb on + strand at 3710.839 kb on + strand at 3710.847 kb on - strand at 3710.847 kb on - strand at 3710.847 kb on - strand at 3710.847 kb on - strand at 3710.847 kb on - strand at 3710.847 kb on - strand at 3710.848 kb on - strand at 3710.857 kb on - strand at 3710.859 kb on + strand at 3710.861 kb on + strand at 3710.867 kb on - strand at 3710.869 kb on - strand at 3710.871 kb on + strand at 3710.876 kb on + strand at 3710.876 kb on + strand at 3710.879 kb on - strand at 3710.911 kb on - strand at 3710.921 kb on - strand at 3710.923 kb on + strand at 3710.923 kb on - strand at 3711.132 kb on + strand, within BWI76_RS17850 at 3711.133 kb on - strand, within BWI76_RS17850 at 3711.135 kb on - strand, within BWI76_RS17850 at 3711.142 kb on + strand, within BWI76_RS17850 at 3711.308 kb on + strand, within BWI76_RS17850 at 3711.310 kb on - strand, within BWI76_RS17850 at 3711.427 kb on - strand, within BWI76_RS17850 at 3711.460 kb on - strand, within BWI76_RS17850 at 3711.487 kb on + strand at 3711.541 kb on + strand, within BWI76_RS17850 at 3711.756 kb on + strand, within BWI76_RS17850 at 3711.831 kb on - strand, within BWI76_RS17850 at 3711.848 kb on - strand, within BWI76_RS17850 at 3712.068 kb on - strand at 3712.250 kb on - strand at 3712.456 kb on + strand, within BWI76_RS17855 at 3712.484 kb on + strand, within BWI76_RS17855 at 3712.570 kb on - strand, within BWI76_RS17855 at 3712.622 kb on + strand, within BWI76_RS17855 at 3712.832 kb on - strand, within BWI76_RS17855 at 3712.936 kb on - strand, within BWI76_RS17855 at 3713.040 kb on + strand, within BWI76_RS17855
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 3,709,953 + BWI76_RS17845 0.72 -0.3 3,709,961 - BWI76_RS17845 0.73 -1.5 3,710,027 - BWI76_RS17845 0.78 -0.8 3,710,108 + BWI76_RS17845 0.84 +1.4 3,710,116 - BWI76_RS17845 0.85 -1.1 3,710,214 + +0.4 3,710,214 + +0.3 3,710,214 + -3.4 3,710,223 + +1.2 3,710,230 - -1.0 3,710,231 - -0.9 3,710,239 + -2.1 3,710,249 + +0.2 3,710,249 + +1.7 3,710,249 + +2.2 3,710,249 + +0.5 3,710,252 - +1.0 3,710,252 - +0.6 3,710,252 - -0.3 3,710,255 + -0.4 3,710,255 + +1.2 3,710,257 - -2.5 3,710,257 - -1.7 3,710,257 - -0.4 3,710,257 - -0.6 3,710,257 - +1.2 3,710,257 - -0.2 3,710,257 - +0.8 3,710,257 - -0.8 3,710,257 - +1.1 3,710,257 - +1.4 3,710,257 - +1.1 3,710,257 - +0.9 3,710,257 - -0.1 3,710,257 - -1.2 3,710,263 - -2.0 3,710,263 - -0.7 3,710,263 - +0.1 3,710,263 - -0.5 3,710,263 - -0.1 3,710,263 - -3.4 3,710,263 - +1.7 3,710,263 - -1.7 3,710,307 + -1.0 3,710,307 + +2.2 3,710,313 - -0.2 3,710,385 + -0.8 3,710,701 + -2.3 3,710,701 + +1.3 3,710,709 - -0.2 3,710,818 + +2.2 3,710,833 - +0.6 3,710,839 + -0.8 3,710,839 + -2.4 3,710,839 + +0.4 3,710,839 + +3.7 3,710,847 - -0.2 3,710,847 - +0.6 3,710,847 - +0.3 3,710,847 - +0.2 3,710,847 - -1.8 3,710,847 - +1.5 3,710,848 - +0.4 3,710,857 - -1.0 3,710,859 + -1.4 3,710,861 + -0.7 3,710,867 - +0.2 3,710,869 - +0.9 3,710,871 + -2.9 3,710,876 + -0.7 3,710,876 + -1.7 3,710,879 - +0.8 3,710,911 - +2.2 3,710,921 - -0.1 3,710,923 + +0.1 3,710,923 - +0.8 3,711,132 + BWI76_RS17850 0.24 -0.2 3,711,133 - BWI76_RS17850 0.24 -0.5 3,711,135 - BWI76_RS17850 0.24 -0.0 3,711,142 + BWI76_RS17850 0.25 -1.3 3,711,308 + BWI76_RS17850 0.38 -0.2 3,711,310 - BWI76_RS17850 0.38 -2.3 3,711,427 - BWI76_RS17850 0.48 -0.4 3,711,460 - BWI76_RS17850 0.50 +0.6 3,711,487 + +1.2 3,711,541 + BWI76_RS17850 0.57 -0.8 3,711,756 + BWI76_RS17850 0.74 -0.3 3,711,831 - BWI76_RS17850 0.80 +0.3 3,711,848 - BWI76_RS17850 0.82 +1.4 3,712,068 - +0.6 3,712,250 - +1.2 3,712,456 + BWI76_RS17855 0.19 -1.3 3,712,484 + BWI76_RS17855 0.20 +0.5 3,712,570 - BWI76_RS17855 0.24 -1.3 3,712,622 + BWI76_RS17855 0.27 -0.4 3,712,832 - BWI76_RS17855 0.37 -2.1 3,712,936 - BWI76_RS17855 0.42 -0.1 3,713,040 + BWI76_RS17855 0.48 -0.1
Or see this region's nucleotide sequence