Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11715

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11705 and BWI76_RS11710 are separated by 34 nucleotidesBWI76_RS11710 and BWI76_RS11715 are separated by 102 nucleotidesBWI76_RS11715 and BWI76_RS11720 are separated by 230 nucleotidesBWI76_RS11720 and BWI76_RS11725 are separated by 285 nucleotides BWI76_RS11705: BWI76_RS11705 - hypothetical protein, at 2,462,475 to 2,464,517 _RS11705 BWI76_RS11710: BWI76_RS11710 - nucleotide excision repair endonuclease, at 2,464,552 to 2,465,412 _RS11710 BWI76_RS11715: BWI76_RS11715 - NAD(+) synthetase, at 2,465,515 to 2,466,342 _RS11715 BWI76_RS11720: BWI76_RS11720 - transcriptional regulator, at 2,466,573 to 2,466,911 _RS11720 BWI76_RS11725: BWI76_RS11725 - PTS sugar transporter subunit IIB, at 2,467,197 to 2,467,517 _RS11725 Position (kb) 2465 2466 2467Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2464.567 kb on - strandat 2464.988 kb on - strand, within BWI76_RS11710at 2465.039 kb on - strand, within BWI76_RS11710at 2465.052 kb on + strand, within BWI76_RS11710at 2465.137 kb on - strand, within BWI76_RS11710at 2466.391 kb on - strandat 2466.391 kb on - strandat 2466.391 kb on - strandat 2466.402 kb on - strandat 2466.451 kb on + strandat 2466.583 kb on - strandat 2466.620 kb on - strand, within BWI76_RS11720at 2466.620 kb on - strand, within BWI76_RS11720at 2466.620 kb on - strand, within BWI76_RS11720at 2466.626 kb on - strand, within BWI76_RS11720at 2466.639 kb on + strand, within BWI76_RS11720at 2466.639 kb on + strand, within BWI76_RS11720at 2466.639 kb on + strand, within BWI76_RS11720at 2466.639 kb on + strand, within BWI76_RS11720at 2466.639 kb on + strand, within BWI76_RS11720at 2466.639 kb on + strand, within BWI76_RS11720at 2466.639 kb on + strand, within BWI76_RS11720at 2466.639 kb on + strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.647 kb on - strand, within BWI76_RS11720at 2466.750 kb on + strand, within BWI76_RS11720at 2466.894 kb on - strandat 2466.894 kb on - strandat 2466.981 kb on - strandat 2466.983 kb on - strandat 2467.031 kb on - strandat 2467.076 kb on + strandat 2467.088 kb on + strandat 2467.090 kb on + strandat 2467.140 kb on + strandat 2467.140 kb on + strandat 2467.148 kb on - strandat 2467.148 kb on - strandat 2467.148 kb on - strandat 2467.148 kb on - strandat 2467.148 kb on - strandat 2467.148 kb on - strandat 2467.174 kb on - strandat 2467.215 kb on + strandat 2467.220 kb on + strandat 2467.220 kb on + strandat 2467.220 kb on + strandat 2467.225 kb on + strandat 2467.228 kb on - strandat 2467.228 kb on - strandat 2467.228 kb on - strandat 2467.235 kb on + strand, within BWI76_RS11725at 2467.236 kb on - strand, within BWI76_RS11725at 2467.238 kb on - strand, within BWI76_RS11725at 2467.243 kb on - strand, within BWI76_RS11725at 2467.243 kb on - strand, within BWI76_RS11725at 2467.246 kb on - strand, within BWI76_RS11725at 2467.282 kb on + strand, within BWI76_RS11725at 2467.298 kb on - strand, within BWI76_RS11725at 2467.319 kb on + strand, within BWI76_RS11725at 2467.327 kb on - strand, within BWI76_RS11725

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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2,464,567 - +0.9
2,464,988 - BWI76_RS11710 0.51 +0.6
2,465,039 - BWI76_RS11710 0.57 +0.7
2,465,052 + BWI76_RS11710 0.58 -0.3
2,465,137 - BWI76_RS11710 0.68 +0.0
2,466,391 - +0.2
2,466,391 - -0.4
2,466,391 - -0.1
2,466,402 - +1.5
2,466,451 + -0.0
2,466,583 - -1.0
2,466,620 - BWI76_RS11720 0.14 -2.9
2,466,620 - BWI76_RS11720 0.14 -1.2
2,466,620 - BWI76_RS11720 0.14 -0.7
2,466,626 - BWI76_RS11720 0.16 -0.1
2,466,639 + BWI76_RS11720 0.19 -0.5
2,466,639 + BWI76_RS11720 0.19 -0.2
2,466,639 + BWI76_RS11720 0.19 -0.0
2,466,639 + BWI76_RS11720 0.19 +0.5
2,466,639 + BWI76_RS11720 0.19 -1.0
2,466,639 + BWI76_RS11720 0.19 +0.3
2,466,639 + BWI76_RS11720 0.19 +0.7
2,466,639 + BWI76_RS11720 0.19 -0.2
2,466,647 - BWI76_RS11720 0.22 +1.6
2,466,647 - BWI76_RS11720 0.22 -0.1
2,466,647 - BWI76_RS11720 0.22 +2.1
2,466,647 - BWI76_RS11720 0.22 +2.1
2,466,647 - BWI76_RS11720 0.22 -1.5
2,466,647 - BWI76_RS11720 0.22 -4.0
2,466,647 - BWI76_RS11720 0.22 -0.1
2,466,647 - BWI76_RS11720 0.22 -2.4
2,466,647 - BWI76_RS11720 0.22 -1.0
2,466,647 - BWI76_RS11720 0.22 -0.4
2,466,647 - BWI76_RS11720 0.22 -2.1
2,466,647 - BWI76_RS11720 0.22 -0.1
2,466,647 - BWI76_RS11720 0.22 -1.2
2,466,750 + BWI76_RS11720 0.52 +1.0
2,466,894 - -0.1
2,466,894 - +0.6
2,466,981 - -0.0
2,466,983 - -1.4
2,467,031 - +0.0
2,467,076 + -0.7
2,467,088 + -2.4
2,467,090 + +1.4
2,467,140 + -1.0
2,467,140 + -0.9
2,467,148 - -0.3
2,467,148 - -1.2
2,467,148 - -0.1
2,467,148 - -1.2
2,467,148 - +0.2
2,467,148 - +1.1
2,467,174 - -0.2
2,467,215 + +0.6
2,467,220 + +0.8
2,467,220 + -2.1
2,467,220 + -1.3
2,467,225 + -1.4
2,467,228 - +1.3
2,467,228 - +0.1
2,467,228 - +0.2
2,467,235 + BWI76_RS11725 0.12 -3.5
2,467,236 - BWI76_RS11725 0.12 +1.4
2,467,238 - BWI76_RS11725 0.13 +1.1
2,467,243 - BWI76_RS11725 0.14 +0.7
2,467,243 - BWI76_RS11725 0.14 -0.1
2,467,246 - BWI76_RS11725 0.15 +0.6
2,467,282 + BWI76_RS11725 0.26 -0.4
2,467,298 - BWI76_RS11725 0.31 -0.4
2,467,319 + BWI76_RS11725 0.38 +1.6
2,467,327 - BWI76_RS11725 0.40 -1.8

Or see this region's nucleotide sequence