Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10275

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10270 and BWI76_RS10275 are separated by 13 nucleotidesBWI76_RS10275 and BWI76_RS10280 overlap by 4 nucleotidesBWI76_RS10280 and BWI76_RS10285 are separated by 28 nucleotides BWI76_RS10270: BWI76_RS10270 - acetylornithine deacetylase, at 2,175,145 to 2,176,320 _RS10270 BWI76_RS10275: BWI76_RS10275 - ABC transporter, at 2,176,334 to 2,177,074 _RS10275 BWI76_RS10280: BWI76_RS10280 - polar amino acid ABC transporter permease, at 2,177,071 to 2,177,796 _RS10280 BWI76_RS10285: BWI76_RS10285 - family 3 extracellular solute-binding protein, at 2,177,825 to 2,178,637 _RS10285 Position (kb) 2176 2177 2178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2175.825 kb on - strand, within BWI76_RS10270at 2176.089 kb on - strand, within BWI76_RS10270at 2176.116 kb on - strand, within BWI76_RS10270at 2176.353 kb on + strandat 2176.494 kb on - strand, within BWI76_RS10275at 2176.517 kb on - strand, within BWI76_RS10275at 2176.813 kb on + strand, within BWI76_RS10275at 2176.990 kb on + strand, within BWI76_RS10275at 2177.183 kb on + strand, within BWI76_RS10280at 2177.191 kb on - strand, within BWI76_RS10280at 2177.663 kb on + strand, within BWI76_RS10280at 2177.696 kb on + strand, within BWI76_RS10280at 2177.701 kb on + strand, within BWI76_RS10280at 2177.706 kb on + strand, within BWI76_RS10280at 2177.793 kb on + strandat 2177.981 kb on - strand, within BWI76_RS10285

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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2,175,825 - BWI76_RS10270 0.58 -3.8
2,176,089 - BWI76_RS10270 0.80 -0.3
2,176,116 - BWI76_RS10270 0.83 +0.1
2,176,353 + +0.5
2,176,494 - BWI76_RS10275 0.22 +1.5
2,176,517 - BWI76_RS10275 0.25 +0.3
2,176,813 + BWI76_RS10275 0.65 +0.7
2,176,990 + BWI76_RS10275 0.89 +0.1
2,177,183 + BWI76_RS10280 0.15 -0.9
2,177,191 - BWI76_RS10280 0.17 -2.8
2,177,663 + BWI76_RS10280 0.82 -0.4
2,177,696 + BWI76_RS10280 0.86 -1.0
2,177,701 + BWI76_RS10280 0.87 +0.5
2,177,706 + BWI76_RS10280 0.87 -0.0
2,177,793 + +0.7
2,177,981 - BWI76_RS10285 0.19 -0.8

Or see this region's nucleotide sequence