Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09930

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09925 and BWI76_RS09930 are separated by 12 nucleotidesBWI76_RS09930 and BWI76_RS09935 are separated by 14 nucleotides BWI76_RS09925: BWI76_RS09925 - 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase, at 2,087,155 to 2,089,260 _RS09925 BWI76_RS09930: BWI76_RS09930 - ABC transporter ATPase, at 2,089,273 to 2,091,180 _RS09930 BWI76_RS09935: BWI76_RS09935 - paraquat-inducible membrane protein A, at 2,091,195 to 2,092,463 _RS09935 Position (kb) 2089 2090 2091 2092Strain fitness (log2 ratio) -2 -1 0 1 2at 2088.679 kb on - strand, within BWI76_RS09925at 2088.884 kb on + strand, within BWI76_RS09925at 2089.020 kb on + strand, within BWI76_RS09925at 2089.173 kb on - strandat 2089.481 kb on + strand, within BWI76_RS09930at 2089.571 kb on - strandat 2089.601 kb on - strand, within BWI76_RS09930at 2089.666 kb on - strand, within BWI76_RS09930at 2089.707 kb on + strand, within BWI76_RS09930at 2089.785 kb on + strand, within BWI76_RS09930at 2089.785 kb on + strand, within BWI76_RS09930at 2089.882 kb on - strand, within BWI76_RS09930at 2089.971 kb on - strand, within BWI76_RS09930at 2090.403 kb on + strand, within BWI76_RS09930at 2090.615 kb on - strand, within BWI76_RS09930at 2090.790 kb on + strand, within BWI76_RS09930at 2090.848 kb on - strand, within BWI76_RS09930at 2091.184 kb on + strandat 2091.477 kb on + strand, within BWI76_RS09935at 2091.625 kb on - strand, within BWI76_RS09935at 2091.988 kb on + strand, within BWI76_RS09935

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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2,088,679 - BWI76_RS09925 0.72 -0.3
2,088,884 + BWI76_RS09925 0.82 +2.0
2,089,020 + BWI76_RS09925 0.89 +1.1
2,089,173 - -2.4
2,089,481 + BWI76_RS09930 0.11 +0.5
2,089,571 - -0.4
2,089,601 - BWI76_RS09930 0.17 -0.7
2,089,666 - BWI76_RS09930 0.21 -0.0
2,089,707 + BWI76_RS09930 0.23 -0.8
2,089,785 + BWI76_RS09930 0.27 -2.2
2,089,785 + BWI76_RS09930 0.27 -0.8
2,089,882 - BWI76_RS09930 0.32 +0.3
2,089,971 - BWI76_RS09930 0.37 +0.9
2,090,403 + BWI76_RS09930 0.59 +0.8
2,090,615 - BWI76_RS09930 0.70 -0.4
2,090,790 + BWI76_RS09930 0.80 -0.1
2,090,848 - BWI76_RS09930 0.83 -1.9
2,091,184 + +0.5
2,091,477 + BWI76_RS09935 0.22 -1.8
2,091,625 - BWI76_RS09935 0.34 -2.1
2,091,988 + BWI76_RS09935 0.62 -0.9

Or see this region's nucleotide sequence