Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08965 and BWI76_RS08970 overlap by 4 nucleotides BWI76_RS08970 and BWI76_RS08975 are separated by 134 nucleotides BWI76_RS08975 and BWI76_RS08980 are separated by 376 nucleotides
BWI76_RS08965: BWI76_RS08965 - glutamine ABC transporter ATP-binding protein, at 1,889,883 to 1,890,605
_RS08965
BWI76_RS08970: BWI76_RS08970 - glutamine ABC transporter permease GlnP, at 1,890,602 to 1,891,261
_RS08970
BWI76_RS08975: BWI76_RS08975 - amino acid ABC transporter substrate-binding protein, at 1,891,396 to 1,892,142
_RS08975
BWI76_RS08980: BWI76_RS08980 - DNA starvation/stationary phase protection protein, at 1,892,519 to 1,893,022
_RS08980
Position (kb)
1891
1892
1893 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1890.421 kb on - strand, within BWI76_RS08965 at 1890.461 kb on + strand, within BWI76_RS08965 at 1890.469 kb on - strand, within BWI76_RS08965 at 1890.474 kb on + strand, within BWI76_RS08965 at 1890.487 kb on - strand, within BWI76_RS08965 at 1890.645 kb on - strand at 1890.973 kb on - strand, within BWI76_RS08970 at 1891.266 kb on - strand at 1891.266 kb on - strand at 1891.275 kb on - strand at 1891.379 kb on - strand at 1891.499 kb on - strand, within BWI76_RS08975 at 1891.553 kb on + strand, within BWI76_RS08975 at 1891.944 kb on + strand, within BWI76_RS08975 at 1891.981 kb on + strand, within BWI76_RS08975 at 1891.994 kb on - strand, within BWI76_RS08975 at 1892.126 kb on - strand at 1892.145 kb on - strand at 1892.167 kb on + strand at 1892.167 kb on + strand at 1892.449 kb on + strand at 1892.457 kb on - strand at 1892.524 kb on - strand at 1892.683 kb on - strand, within BWI76_RS08980 at 1893.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 1,890,421 - BWI76_RS08965 0.74 +2.2 1,890,461 + BWI76_RS08965 0.80 -0.5 1,890,469 - BWI76_RS08965 0.81 -0.0 1,890,474 + BWI76_RS08965 0.82 +0.3 1,890,487 - BWI76_RS08965 0.84 +0.1 1,890,645 - -0.1 1,890,973 - BWI76_RS08970 0.56 +0.2 1,891,266 - +2.1 1,891,266 - +0.2 1,891,275 - -0.5 1,891,379 - -0.2 1,891,499 - BWI76_RS08975 0.14 -0.4 1,891,553 + BWI76_RS08975 0.21 -1.1 1,891,944 + BWI76_RS08975 0.73 -0.6 1,891,981 + BWI76_RS08975 0.78 -0.9 1,891,994 - BWI76_RS08975 0.80 -0.1 1,892,126 - -0.0 1,892,145 - +1.4 1,892,167 + -0.3 1,892,167 + +1.5 1,892,449 + -1.0 1,892,457 - +0.5 1,892,524 - -2.5 1,892,683 - BWI76_RS08980 0.33 +0.7 1,893,108 + +0.3
Or see this region's nucleotide sequence