Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06660 and BWI76_RS06665 are separated by 87 nucleotides BWI76_RS06665 and BWI76_RS06670 are separated by 92 nucleotides BWI76_RS06670 and BWI76_RS06675 are separated by 46 nucleotides
BWI76_RS06660: BWI76_RS06660 - GntR family transcriptional regulator with, at 1,396,628 to 1,398,055
_RS06660
BWI76_RS06665: BWI76_RS06665 - membrane protein, at 1,398,143 to 1,398,757
_RS06665
BWI76_RS06670: BWI76_RS06670 - hypothetical protein, at 1,398,850 to 1,399,203
_RS06670
BWI76_RS06675: BWI76_RS06675 - nickel/cobalt efflux protein RcnA, at 1,399,250 to 1,400,083
_RS06675
Position (kb)
1398
1399 Strain fitness (log2 ratio)
-2
-1
0
1 at 1397.398 kb on + strand, within BWI76_RS06660 at 1397.434 kb on - strand, within BWI76_RS06660 at 1397.626 kb on - strand, within BWI76_RS06660 at 1397.718 kb on - strand, within BWI76_RS06660 at 1397.818 kb on - strand, within BWI76_RS06660 at 1397.937 kb on + strand at 1398.136 kb on - strand at 1398.187 kb on - strand at 1398.298 kb on + strand, within BWI76_RS06665 at 1398.472 kb on + strand, within BWI76_RS06665 at 1398.775 kb on - strand at 1398.898 kb on + strand, within BWI76_RS06670 at 1398.964 kb on + strand, within BWI76_RS06670 at 1398.972 kb on - strand, within BWI76_RS06670 at 1399.025 kb on + strand, within BWI76_RS06670 at 1399.045 kb on + strand, within BWI76_RS06670 at 1399.058 kb on + strand, within BWI76_RS06670 at 1399.070 kb on + strand, within BWI76_RS06670 at 1399.078 kb on - strand, within BWI76_RS06670 at 1399.178 kb on + strand at 1399.186 kb on - strand at 1399.301 kb on - strand at 1399.444 kb on + strand, within BWI76_RS06675 at 1399.452 kb on - strand, within BWI76_RS06675 at 1399.489 kb on + strand, within BWI76_RS06675 at 1399.554 kb on + strand, within BWI76_RS06675 at 1399.554 kb on + strand, within BWI76_RS06675 at 1399.554 kb on + strand, within BWI76_RS06675 at 1399.562 kb on - strand, within BWI76_RS06675 at 1399.640 kb on + strand, within BWI76_RS06675
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 1,397,398 + BWI76_RS06660 0.54 -0.4 1,397,434 - BWI76_RS06660 0.56 +1.3 1,397,626 - BWI76_RS06660 0.70 -1.1 1,397,718 - BWI76_RS06660 0.76 +0.7 1,397,818 - BWI76_RS06660 0.83 +0.1 1,397,937 + -0.3 1,398,136 - +0.6 1,398,187 - +0.6 1,398,298 + BWI76_RS06665 0.25 -1.9 1,398,472 + BWI76_RS06665 0.53 +0.4 1,398,775 - +0.5 1,398,898 + BWI76_RS06670 0.14 +0.2 1,398,964 + BWI76_RS06670 0.32 +0.1 1,398,972 - BWI76_RS06670 0.34 -0.8 1,399,025 + BWI76_RS06670 0.49 +1.2 1,399,045 + BWI76_RS06670 0.55 -0.1 1,399,058 + BWI76_RS06670 0.59 -1.6 1,399,070 + BWI76_RS06670 0.62 -2.3 1,399,078 - BWI76_RS06670 0.64 -0.1 1,399,178 + +0.6 1,399,186 - -0.5 1,399,301 - -0.6 1,399,444 + BWI76_RS06675 0.23 +0.8 1,399,452 - BWI76_RS06675 0.24 +0.1 1,399,489 + BWI76_RS06675 0.29 +1.3 1,399,554 + BWI76_RS06675 0.36 -0.8 1,399,554 + BWI76_RS06675 0.36 +0.1 1,399,554 + BWI76_RS06675 0.36 +0.6 1,399,562 - BWI76_RS06675 0.37 +1.3 1,399,640 + BWI76_RS06675 0.47 -2.3
Or see this region's nucleotide sequence