Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03380

Experiment: Casamino Acids (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03370 and BWI76_RS03375 are separated by 114 nucleotidesBWI76_RS03375 and BWI76_RS03380 are separated by 179 nucleotidesBWI76_RS03380 and BWI76_RS03385 are separated by 186 nucleotidesBWI76_RS03385 and BWI76_RS03390 are separated by 113 nucleotides BWI76_RS03370: BWI76_RS03370 - type I restriction-modification system subunit S, at 694,751 to 696,202 _RS03370 BWI76_RS03375: BWI76_RS03375 - transcriptional regulator, at 696,317 to 696,595 _RS03375 BWI76_RS03380: BWI76_RS03380 - hypothetical protein, at 696,775 to 697,692 _RS03380 BWI76_RS03385: BWI76_RS03385 - hypothetical protein, at 697,879 to 698,430 _RS03385 BWI76_RS03390: BWI76_RS03390 - hypothetical protein, at 698,544 to 699,287 _RS03390 Position (kb) 696 697 698Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 695.918 kb on + strand, within BWI76_RS03370at 696.084 kb on + strandat 696.084 kb on + strandat 696.084 kb on + strandat 696.084 kb on + strandat 696.091 kb on + strandat 696.092 kb on - strandat 696.096 kb on + strandat 696.098 kb on + strandat 696.098 kb on + strandat 696.098 kb on + strandat 696.098 kb on + strandat 696.098 kb on + strandat 696.106 kb on - strandat 696.127 kb on + strandat 696.195 kb on + strandat 696.372 kb on - strand, within BWI76_RS03375at 696.372 kb on - strand, within BWI76_RS03375at 696.372 kb on - strand, within BWI76_RS03375at 696.372 kb on - strand, within BWI76_RS03375at 696.372 kb on - strand, within BWI76_RS03375at 696.372 kb on - strand, within BWI76_RS03375at 696.422 kb on + strand, within BWI76_RS03375at 696.422 kb on + strand, within BWI76_RS03375at 696.422 kb on + strandat 696.423 kb on + strand, within BWI76_RS03375at 696.423 kb on + strand, within BWI76_RS03375at 696.423 kb on + strand, within BWI76_RS03375at 696.423 kb on + strand, within BWI76_RS03375at 696.430 kb on - strand, within BWI76_RS03375at 696.430 kb on - strand, within BWI76_RS03375at 696.430 kb on - strand, within BWI76_RS03375at 696.430 kb on - strand, within BWI76_RS03375at 696.430 kb on - strand, within BWI76_RS03375at 696.430 kb on - strand, within BWI76_RS03375at 696.431 kb on - strand, within BWI76_RS03375at 696.431 kb on - strand, within BWI76_RS03375at 696.431 kb on - strand, within BWI76_RS03375at 696.431 kb on - strand, within BWI76_RS03375at 696.431 kb on - strand, within BWI76_RS03375at 696.431 kb on - strand, within BWI76_RS03375at 696.448 kb on - strand, within BWI76_RS03375at 696.456 kb on + strand, within BWI76_RS03375at 696.458 kb on - strand, within BWI76_RS03375at 696.492 kb on + strand, within BWI76_RS03375at 696.492 kb on + strand, within BWI76_RS03375at 696.492 kb on + strand, within BWI76_RS03375at 696.493 kb on + strand, within BWI76_RS03375at 696.493 kb on + strand, within BWI76_RS03375at 696.500 kb on - strand, within BWI76_RS03375at 696.500 kb on - strand, within BWI76_RS03375at 696.500 kb on - strand, within BWI76_RS03375at 696.500 kb on - strand, within BWI76_RS03375at 696.500 kb on - strand, within BWI76_RS03375at 696.501 kb on - strand, within BWI76_RS03375at 696.511 kb on - strand, within BWI76_RS03375at 696.514 kb on + strand, within BWI76_RS03375at 696.514 kb on + strand, within BWI76_RS03375at 696.514 kb on + strand, within BWI76_RS03375at 696.514 kb on + strand, within BWI76_RS03375at 696.522 kb on - strand, within BWI76_RS03375at 696.522 kb on - strand, within BWI76_RS03375at 696.522 kb on - strand, within BWI76_RS03375at 696.522 kb on - strand, within BWI76_RS03375at 696.522 kb on - strand, within BWI76_RS03375at 696.522 kb on - strand, within BWI76_RS03375at 696.522 kb on - strand, within BWI76_RS03375at 696.527 kb on - strand, within BWI76_RS03375at 696.545 kb on - strand, within BWI76_RS03375at 696.573 kb on + strandat 696.581 kb on - strandat 696.600 kb on - strandat 696.615 kb on + strandat 696.678 kb on - strandat 696.682 kb on + strandat 696.690 kb on - strandat 696.720 kb on + strandat 696.720 kb on + strandat 696.720 kb on + strandat 696.741 kb on + strandat 696.741 kb on + strandat 696.769 kb on + strandat 696.771 kb on + strandat 696.811 kb on + strandat 696.832 kb on - strandat 696.887 kb on + strand, within BWI76_RS03380at 696.887 kb on + strand, within BWI76_RS03380at 696.900 kb on + strand, within BWI76_RS03380at 696.900 kb on + strand, within BWI76_RS03380at 696.900 kb on + strand, within BWI76_RS03380at 696.900 kb on + strand, within BWI76_RS03380at 696.900 kb on + strand, within BWI76_RS03380at 696.908 kb on - strand, within BWI76_RS03380at 696.908 kb on - strand, within BWI76_RS03380at 696.908 kb on - strand, within BWI76_RS03380at 696.908 kb on - strand, within BWI76_RS03380at 696.921 kb on - strand, within BWI76_RS03380at 696.929 kb on + strand, within BWI76_RS03380at 696.931 kb on + strand, within BWI76_RS03380at 696.938 kb on + strand, within BWI76_RS03380at 696.938 kb on - strand, within BWI76_RS03380at 696.939 kb on - strand, within BWI76_RS03380at 697.012 kb on + strand, within BWI76_RS03380at 697.020 kb on - strand, within BWI76_RS03380at 697.020 kb on - strand, within BWI76_RS03380at 697.039 kb on - strand, within BWI76_RS03380at 697.052 kb on - strand, within BWI76_RS03380at 697.088 kb on - strand, within BWI76_RS03380at 697.095 kb on - strand, within BWI76_RS03380at 697.254 kb on + strand, within BWI76_RS03380at 697.531 kb on + strand, within BWI76_RS03380at 697.531 kb on + strand, within BWI76_RS03380at 697.531 kb on + strand, within BWI76_RS03380at 697.539 kb on - strand, within BWI76_RS03380at 697.539 kb on - strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.541 kb on + strand, within BWI76_RS03380at 697.542 kb on + strand, within BWI76_RS03380at 697.549 kb on + strand, within BWI76_RS03380at 697.549 kb on - strand, within BWI76_RS03380at 697.624 kb on + strandat 697.627 kb on + strandat 697.632 kb on + strandat 697.639 kb on + strandat 697.639 kb on + strandat 697.639 kb on + strandat 697.639 kb on + strandat 697.639 kb on + strandat 697.639 kb on + strandat 697.639 kb on + strandat 697.639 kb on + strandat 697.647 kb on - strandat 697.647 kb on - strandat 697.647 kb on - strandat 697.704 kb on + strandat 697.754 kb on - strandat 697.835 kb on + strandat 697.835 kb on + strandat 697.860 kb on + strandat 697.860 kb on + strandat 697.860 kb on + strandat 697.868 kb on - strandat 697.961 kb on + strand, within BWI76_RS03385at 697.969 kb on - strand, within BWI76_RS03385at 697.994 kb on + strand, within BWI76_RS03385at 698.002 kb on + strand, within BWI76_RS03385at 698.027 kb on + strand, within BWI76_RS03385at 698.036 kb on - strand, within BWI76_RS03385at 698.039 kb on + strand, within BWI76_RS03385at 698.127 kb on + strand, within BWI76_RS03385at 698.163 kb on + strand, within BWI76_RS03385at 698.163 kb on + strand, within BWI76_RS03385at 698.163 kb on + strandat 698.171 kb on + strand, within BWI76_RS03385at 698.171 kb on + strand, within BWI76_RS03385at 698.171 kb on + strand, within BWI76_RS03385at 698.171 kb on + strand, within BWI76_RS03385at 698.171 kb on - strand, within BWI76_RS03385at 698.232 kb on + strand, within BWI76_RS03385at 698.232 kb on + strand, within BWI76_RS03385at 698.233 kb on + strand, within BWI76_RS03385at 698.240 kb on + strand, within BWI76_RS03385at 698.246 kb on + strand, within BWI76_RS03385at 698.247 kb on + strand, within BWI76_RS03385at 698.247 kb on + strand, within BWI76_RS03385at 698.247 kb on - strand, within BWI76_RS03385at 698.255 kb on - strand, within BWI76_RS03385at 698.259 kb on + strand, within BWI76_RS03385at 698.259 kb on + strandat 698.259 kb on + strand, within BWI76_RS03385at 698.259 kb on + strand, within BWI76_RS03385at 698.259 kb on + strand, within BWI76_RS03385at 698.267 kb on - strand, within BWI76_RS03385at 698.267 kb on - strand, within BWI76_RS03385at 698.268 kb on - strand, within BWI76_RS03385at 698.268 kb on - strand, within BWI76_RS03385at 698.289 kb on + strand, within BWI76_RS03385at 698.313 kb on + strand, within BWI76_RS03385at 698.366 kb on + strand, within BWI76_RS03385at 698.366 kb on + strand, within BWI76_RS03385at 698.366 kb on + strand, within BWI76_RS03385at 698.380 kb on + strandat 698.388 kb on - strandat 698.388 kb on - strandat 698.472 kb on + strandat 698.479 kb on + strandat 698.479 kb on + strandat 698.479 kb on + strandat 698.479 kb on + strandat 698.479 kb on + strandat 698.479 kb on + strandat 698.479 kb on + strandat 698.479 kb on + strandat 698.487 kb on - strandat 698.487 kb on - strandat 698.487 kb on - strandat 698.500 kb on + strandat 698.505 kb on + strandat 698.508 kb on - strandat 698.555 kb on + strandat 698.573 kb on + strandat 698.573 kb on + strandat 698.582 kb on + strandat 698.590 kb on - strandat 698.591 kb on + strandat 698.592 kb on + strandat 698.592 kb on + strandat 698.592 kb on + strandat 698.592 kb on + strandat 698.592 kb on + strandat 698.592 kb on + strandat 698.592 kb on + strandat 698.592 kb on + strandat 698.592 kb on + strandat 698.595 kb on + strandat 698.597 kb on + strandat 698.597 kb on + strandat 698.600 kb on - strandat 698.600 kb on - strandat 698.600 kb on - strandat 698.600 kb on - strandat 698.600 kb on - strandat 698.600 kb on - strandat 698.600 kb on - strandat 698.600 kb on - strandat 698.602 kb on + strandat 698.606 kb on + strandat 698.609 kb on + strandat 698.614 kb on + strandat 698.614 kb on - strandat 698.616 kb on + strandat 698.632 kb on + strand, within BWI76_RS03390at 698.640 kb on - strand, within BWI76_RS03390at 698.644 kb on + strand, within BWI76_RS03390at 698.644 kb on + strand, within BWI76_RS03390at 698.644 kb on + strand, within BWI76_RS03390at 698.644 kb on + strand, within BWI76_RS03390at 698.646 kb on - strand, within BWI76_RS03390at 698.652 kb on - strand, within BWI76_RS03390at 698.652 kb on - strand, within BWI76_RS03390at 698.652 kb on - strand, within BWI76_RS03390at 698.654 kb on + strand, within BWI76_RS03390at 698.662 kb on - strand, within BWI76_RS03390at 698.663 kb on + strand, within BWI76_RS03390at 698.683 kb on + strandat 698.691 kb on - strand, within BWI76_RS03390

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino Acids (N)
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695,918 + BWI76_RS03370 0.80 +0.3
696,084 + -2.5
696,084 + -0.6
696,084 + +0.8
696,084 + -0.9
696,091 + +0.3
696,092 - -0.2
696,096 + -1.4
696,098 + -0.2
696,098 + +1.8
696,098 + +0.6
696,098 + -1.4
696,098 + +0.1
696,106 - +0.4
696,127 + +1.1
696,195 + -0.9
696,372 - BWI76_RS03375 0.20 +1.4
696,372 - BWI76_RS03375 0.20 -0.5
696,372 - BWI76_RS03375 0.20 -1.0
696,372 - BWI76_RS03375 0.20 -0.6
696,372 - BWI76_RS03375 0.20 -3.8
696,372 - BWI76_RS03375 0.20 +0.1
696,422 + BWI76_RS03375 0.38 -0.4
696,422 + BWI76_RS03375 0.38 -1.2
696,422 + +1.4
696,423 + BWI76_RS03375 0.38 +0.8
696,423 + BWI76_RS03375 0.38 -1.6
696,423 + BWI76_RS03375 0.38 -1.6
696,423 + BWI76_RS03375 0.38 -0.2
696,430 - BWI76_RS03375 0.41 +1.3
696,430 - BWI76_RS03375 0.41 +0.8
696,430 - BWI76_RS03375 0.41 +0.7
696,430 - BWI76_RS03375 0.41 -1.0
696,430 - BWI76_RS03375 0.41 +0.2
696,430 - BWI76_RS03375 0.41 -1.2
696,431 - BWI76_RS03375 0.41 +1.4
696,431 - BWI76_RS03375 0.41 -2.3
696,431 - BWI76_RS03375 0.41 +0.0
696,431 - BWI76_RS03375 0.41 +2.0
696,431 - BWI76_RS03375 0.41 -0.6
696,431 - BWI76_RS03375 0.41 -0.0
696,448 - BWI76_RS03375 0.47 +0.0
696,456 + BWI76_RS03375 0.50 -0.6
696,458 - BWI76_RS03375 0.51 -1.3
696,492 + BWI76_RS03375 0.63 +2.4
696,492 + BWI76_RS03375 0.63 -1.2
696,492 + BWI76_RS03375 0.63 +0.1
696,493 + BWI76_RS03375 0.63 -1.7
696,493 + BWI76_RS03375 0.63 -0.9
696,500 - BWI76_RS03375 0.66 -1.3
696,500 - BWI76_RS03375 0.66 +3.4
696,500 - BWI76_RS03375 0.66 +2.9
696,500 - BWI76_RS03375 0.66 -3.8
696,500 - BWI76_RS03375 0.66 +0.2
696,501 - BWI76_RS03375 0.66 +1.8
696,511 - BWI76_RS03375 0.70 -0.4
696,514 + BWI76_RS03375 0.71 -0.5
696,514 + BWI76_RS03375 0.71 +2.4
696,514 + BWI76_RS03375 0.71 -1.0
696,514 + BWI76_RS03375 0.71 -0.9
696,522 - BWI76_RS03375 0.73 -0.1
696,522 - BWI76_RS03375 0.73 -0.1
696,522 - BWI76_RS03375 0.73 -2.3
696,522 - BWI76_RS03375 0.73 +1.0
696,522 - BWI76_RS03375 0.73 -0.7
696,522 - BWI76_RS03375 0.73 -1.6
696,522 - BWI76_RS03375 0.73 -0.5
696,527 - BWI76_RS03375 0.75 -0.2
696,545 - BWI76_RS03375 0.82 -1.2
696,573 + +2.4
696,581 - -0.6
696,600 - -0.4
696,615 + -1.7
696,678 - -0.4
696,682 + -0.4
696,690 - -1.8
696,720 + +0.6
696,720 + -1.8
696,720 + +0.0
696,741 + -1.7
696,741 + +0.1
696,769 + -1.0
696,771 + +0.6
696,811 + -2.5
696,832 - -0.4
696,887 + BWI76_RS03380 0.12 +1.1
696,887 + BWI76_RS03380 0.12 -2.9
696,900 + BWI76_RS03380 0.14 -0.5
696,900 + BWI76_RS03380 0.14 -0.2
696,900 + BWI76_RS03380 0.14 -0.2
696,900 + BWI76_RS03380 0.14 -0.2
696,900 + BWI76_RS03380 0.14 -0.6
696,908 - BWI76_RS03380 0.14 +1.3
696,908 - BWI76_RS03380 0.14 -0.1
696,908 - BWI76_RS03380 0.14 +2.1
696,908 - BWI76_RS03380 0.14 +0.1
696,921 - BWI76_RS03380 0.16 +1.3
696,929 + BWI76_RS03380 0.17 -2.6
696,931 + BWI76_RS03380 0.17 -0.7
696,938 + BWI76_RS03380 0.18 -0.4
696,938 - BWI76_RS03380 0.18 +0.9
696,939 - BWI76_RS03380 0.18 -1.3
697,012 + BWI76_RS03380 0.26 +1.4
697,020 - BWI76_RS03380 0.27 -1.3
697,020 - BWI76_RS03380 0.27 -1.0
697,039 - BWI76_RS03380 0.29 +0.1
697,052 - BWI76_RS03380 0.30 -0.4
697,088 - BWI76_RS03380 0.34 +2.4
697,095 - BWI76_RS03380 0.35 +1.8
697,254 + BWI76_RS03380 0.52 -0.4
697,531 + BWI76_RS03380 0.82 -0.9
697,531 + BWI76_RS03380 0.82 -1.7
697,531 + BWI76_RS03380 0.82 +0.8
697,539 - BWI76_RS03380 0.83 -0.7
697,539 - BWI76_RS03380 0.83 -2.5
697,541 + BWI76_RS03380 0.83 +0.9
697,541 + BWI76_RS03380 0.83 +0.8
697,541 + BWI76_RS03380 0.83 -0.6
697,541 + BWI76_RS03380 0.83 -0.6
697,541 + BWI76_RS03380 0.83 -2.9
697,541 + BWI76_RS03380 0.83 -2.8
697,541 + BWI76_RS03380 0.83 -0.4
697,541 + BWI76_RS03380 0.83 -1.2
697,541 + BWI76_RS03380 0.83 -1.4
697,541 + BWI76_RS03380 0.83 +0.1
697,541 + BWI76_RS03380 0.83 +0.3
697,541 + BWI76_RS03380 0.83 -0.4
697,542 + BWI76_RS03380 0.84 -0.9
697,549 + BWI76_RS03380 0.84 -1.2
697,549 - BWI76_RS03380 0.84 -2.2
697,624 + -0.2
697,627 + -1.0
697,632 + -1.7
697,639 + -2.2
697,639 + +0.4
697,639 + -1.0
697,639 + -3.1
697,639 + -0.1
697,639 + +2.4
697,639 + +2.0
697,639 + +2.6
697,647 - -0.4
697,647 - -0.5
697,647 - +0.8
697,704 + -0.7
697,754 - +1.8
697,835 + -0.6
697,835 + +0.4
697,860 + -0.7
697,860 + +0.8
697,860 + -0.7
697,868 - +1.6
697,961 + BWI76_RS03385 0.15 +0.8
697,969 - BWI76_RS03385 0.16 -2.3
697,994 + BWI76_RS03385 0.21 -0.4
698,002 + BWI76_RS03385 0.22 +1.4
698,027 + BWI76_RS03385 0.27 -1.0
698,036 - BWI76_RS03385 0.28 -0.6
698,039 + BWI76_RS03385 0.29 -0.7
698,127 + BWI76_RS03385 0.45 -1.7
698,163 + BWI76_RS03385 0.51 -2.3
698,163 + BWI76_RS03385 0.51 -0.7
698,163 + +1.4
698,171 + BWI76_RS03385 0.53 -1.7
698,171 + BWI76_RS03385 0.53 -0.0
698,171 + BWI76_RS03385 0.53 +0.4
698,171 + BWI76_RS03385 0.53 +1.5
698,171 - BWI76_RS03385 0.53 -1.7
698,232 + BWI76_RS03385 0.64 +0.4
698,232 + BWI76_RS03385 0.64 -1.2
698,233 + BWI76_RS03385 0.64 +0.4
698,240 + BWI76_RS03385 0.65 +1.8
698,246 + BWI76_RS03385 0.66 +1.6
698,247 + BWI76_RS03385 0.67 -2.3
698,247 + BWI76_RS03385 0.67 -1.8
698,247 - BWI76_RS03385 0.67 -3.3
698,255 - BWI76_RS03385 0.68 -2.7
698,259 + BWI76_RS03385 0.69 +0.1
698,259 + +0.4
698,259 + BWI76_RS03385 0.69 -1.1
698,259 + BWI76_RS03385 0.69 -1.1
698,259 + BWI76_RS03385 0.69 +2.0
698,267 - BWI76_RS03385 0.70 -1.3
698,267 - BWI76_RS03385 0.70 +4.4
698,268 - BWI76_RS03385 0.70 -0.7
698,268 - BWI76_RS03385 0.70 +1.4
698,289 + BWI76_RS03385 0.74 +1.4
698,313 + BWI76_RS03385 0.79 -0.9
698,366 + BWI76_RS03385 0.88 -0.1
698,366 + BWI76_RS03385 0.88 +0.1
698,366 + BWI76_RS03385 0.88 +0.9
698,380 + +1.4
698,388 - -0.4
698,388 - -1.0
698,472 + +0.3
698,479 + -0.7
698,479 + -1.9
698,479 + +0.8
698,479 + +0.7
698,479 + +1.4
698,479 + -2.1
698,479 + -1.2
698,479 + +0.3
698,487 - +0.8
698,487 - -0.4
698,487 - -0.1
698,500 + -2.9
698,505 + +1.0
698,508 - -0.9
698,555 + +0.1
698,573 + +0.6
698,573 + -0.4
698,582 + -0.2
698,590 - +0.1
698,591 + -3.3
698,592 + -1.5
698,592 + -2.1
698,592 + +0.8
698,592 + -1.5
698,592 + -0.6
698,592 + +1.3
698,592 + -0.2
698,592 + +1.6
698,592 + +0.8
698,595 + +0.5
698,597 + -0.1
698,597 + +0.4
698,600 - +0.4
698,600 - -0.6
698,600 - +2.0
698,600 - -1.4
698,600 - +0.0
698,600 - -2.5
698,600 - +1.8
698,600 - -1.3
698,602 + -0.2
698,606 + -2.0
698,609 + +0.4
698,614 + +3.2
698,614 - -0.4
698,616 + -1.6
698,632 + BWI76_RS03390 0.12 -0.1
698,640 - BWI76_RS03390 0.13 -1.2
698,644 + BWI76_RS03390 0.13 +1.3
698,644 + BWI76_RS03390 0.13 +0.4
698,644 + BWI76_RS03390 0.13 +1.8
698,644 + BWI76_RS03390 0.13 -0.6
698,646 - BWI76_RS03390 0.14 +1.3
698,652 - BWI76_RS03390 0.15 -2.5
698,652 - BWI76_RS03390 0.15 +1.3
698,652 - BWI76_RS03390 0.15 +0.5
698,654 + BWI76_RS03390 0.15 -2.5
698,662 - BWI76_RS03390 0.16 -2.0
698,663 + BWI76_RS03390 0.16 +2.0
698,683 + +0.8
698,691 - BWI76_RS03390 0.20 -2.8

Or see this region's nucleotide sequence