Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04621

Experiment: 2-furoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04620 and H281DRAFT_04621 are separated by 113 nucleotidesH281DRAFT_04621 and H281DRAFT_04622 overlap by 4 nucleotides H281DRAFT_04620: H281DRAFT_04620 - aspartyl-tRNA synthetase, at 13,567 to 15,366 _04620 H281DRAFT_04621: H281DRAFT_04621 - dihydroneopterin triphosphate pyrophosphatase, at 15,480 to 16,073 _04621 H281DRAFT_04622: H281DRAFT_04622 - putative cardiolipin synthase, at 16,070 to 17,329 _04622 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1at 15.345 kb on + strandat 15.443 kb on + strandat 15.458 kb on - strandat 15.458 kb on - strandat 15.555 kb on + strand, within H281DRAFT_04621at 15.556 kb on - strand, within H281DRAFT_04621at 15.556 kb on - strand, within H281DRAFT_04621at 15.556 kb on - strand, within H281DRAFT_04621at 15.556 kb on - strand, within H281DRAFT_04621at 15.556 kb on - strand, within H281DRAFT_04621at 15.620 kb on - strand, within H281DRAFT_04621at 15.620 kb on - strand, within H281DRAFT_04621at 15.635 kb on + strand, within H281DRAFT_04621at 15.635 kb on + strand, within H281DRAFT_04621at 15.635 kb on + strand, within H281DRAFT_04621at 15.636 kb on - strand, within H281DRAFT_04621at 15.636 kb on - strand, within H281DRAFT_04621at 15.636 kb on - strand, within H281DRAFT_04621at 15.844 kb on - strand, within H281DRAFT_04621at 15.844 kb on - strand, within H281DRAFT_04621at 15.844 kb on - strand, within H281DRAFT_04621at 15.844 kb on - strand, within H281DRAFT_04621at 15.907 kb on + strand, within H281DRAFT_04621at 15.907 kb on + strand, within H281DRAFT_04621at 15.907 kb on + strand, within H281DRAFT_04621at 15.907 kb on + strand, within H281DRAFT_04621at 15.908 kb on - strand, within H281DRAFT_04621at 15.975 kb on + strand, within H281DRAFT_04621at 16.253 kb on + strand, within H281DRAFT_04622at 16.253 kb on + strand, within H281DRAFT_04622at 16.253 kb on + strand, within H281DRAFT_04622at 16.253 kb on + strand, within H281DRAFT_04622at 16.253 kb on + strand, within H281DRAFT_04622at 16.254 kb on - strand, within H281DRAFT_04622at 16.254 kb on - strand, within H281DRAFT_04622at 16.412 kb on + strand, within H281DRAFT_04622at 16.412 kb on + strand, within H281DRAFT_04622at 16.547 kb on + strand, within H281DRAFT_04622at 16.817 kb on + strand, within H281DRAFT_04622at 16.818 kb on - strand, within H281DRAFT_04622at 16.868 kb on + strand, within H281DRAFT_04622at 16.869 kb on - strand, within H281DRAFT_04622at 16.907 kb on + strand, within H281DRAFT_04622at 16.907 kb on + strand, within H281DRAFT_04622at 16.907 kb on + strand, within H281DRAFT_04622at 16.907 kb on + strand, within H281DRAFT_04622at 16.908 kb on - strand, within H281DRAFT_04622at 16.992 kb on - strand, within H281DRAFT_04622

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-furoic (C)
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15,345 + -1.2
15,443 + +1.5
15,458 - -0.9
15,458 - -0.5
15,555 + H281DRAFT_04621 0.13 -0.0
15,556 - H281DRAFT_04621 0.13 +0.3
15,556 - H281DRAFT_04621 0.13 -0.6
15,556 - H281DRAFT_04621 0.13 +0.6
15,556 - H281DRAFT_04621 0.13 -1.2
15,556 - H281DRAFT_04621 0.13 -0.8
15,620 - H281DRAFT_04621 0.24 -1.4
15,620 - H281DRAFT_04621 0.24 +0.1
15,635 + H281DRAFT_04621 0.26 +0.2
15,635 + H281DRAFT_04621 0.26 -2.4
15,635 + H281DRAFT_04621 0.26 +0.2
15,636 - H281DRAFT_04621 0.26 -0.2
15,636 - H281DRAFT_04621 0.26 +0.1
15,636 - H281DRAFT_04621 0.26 +0.5
15,844 - H281DRAFT_04621 0.61 +0.3
15,844 - H281DRAFT_04621 0.61 -0.5
15,844 - H281DRAFT_04621 0.61 +0.7
15,844 - H281DRAFT_04621 0.61 -0.5
15,907 + H281DRAFT_04621 0.72 +0.3
15,907 + H281DRAFT_04621 0.72 +0.7
15,907 + H281DRAFT_04621 0.72 +0.5
15,907 + H281DRAFT_04621 0.72 +0.0
15,908 - H281DRAFT_04621 0.72 +0.7
15,975 + H281DRAFT_04621 0.83 -0.1
16,253 + H281DRAFT_04622 0.15 -0.0
16,253 + H281DRAFT_04622 0.15 -0.3
16,253 + H281DRAFT_04622 0.15 -0.3
16,253 + H281DRAFT_04622 0.15 -0.7
16,253 + H281DRAFT_04622 0.15 -2.4
16,254 - H281DRAFT_04622 0.15 -0.6
16,254 - H281DRAFT_04622 0.15 -0.2
16,412 + H281DRAFT_04622 0.27 +1.1
16,412 + H281DRAFT_04622 0.27 +0.2
16,547 + H281DRAFT_04622 0.38 +1.2
16,817 + H281DRAFT_04622 0.59 -0.6
16,818 - H281DRAFT_04622 0.59 -0.1
16,868 + H281DRAFT_04622 0.63 +0.6
16,869 - H281DRAFT_04622 0.63 +0.5
16,907 + H281DRAFT_04622 0.66 -0.8
16,907 + H281DRAFT_04622 0.66 -1.7
16,907 + H281DRAFT_04622 0.66 -0.6
16,907 + H281DRAFT_04622 0.66 -0.3
16,908 - H281DRAFT_04622 0.67 -0.2
16,992 - H281DRAFT_04622 0.73 +0.1

Or see this region's nucleotide sequence