Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04400

Experiment: 2-furoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04398 and H281DRAFT_04399 are separated by 19 nucleotidesH281DRAFT_04399 and H281DRAFT_04400 are separated by 156 nucleotidesH281DRAFT_04400 and H281DRAFT_04401 are separated by 201 nucleotides H281DRAFT_04398: H281DRAFT_04398 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 112,775 to 113,680 _04398 H281DRAFT_04399: H281DRAFT_04399 - hydroxyacylglutathione hydrolase, at 113,700 to 114,491 _04399 H281DRAFT_04400: H281DRAFT_04400 - membrane-bound lytic murein transglycosylase D, at 114,648 to 116,297 _04400 H281DRAFT_04401: H281DRAFT_04401 - Cyanate permease, at 116,499 to 117,737 _04401 Position (kb) 114 115 116 117Strain fitness (log2 ratio) -2 -1 0 1 2at 113.660 kb on + strandat 113.661 kb on - strandat 113.661 kb on - strandat 113.681 kb on - strandat 113.716 kb on - strandat 113.720 kb on - strandat 113.745 kb on + strandat 113.745 kb on + strandat 113.745 kb on + strandat 113.745 kb on + strandat 113.745 kb on + strandat 113.745 kb on + strandat 113.746 kb on - strandat 113.746 kb on - strandat 113.746 kb on - strandat 113.818 kb on - strand, within H281DRAFT_04399at 113.854 kb on + strand, within H281DRAFT_04399at 113.926 kb on - strand, within H281DRAFT_04399at 114.020 kb on - strand, within H281DRAFT_04399at 114.057 kb on + strand, within H281DRAFT_04399at 114.226 kb on - strand, within H281DRAFT_04399at 114.433 kb on + strandat 114.434 kb on - strandat 114.434 kb on - strandat 114.455 kb on + strandat 114.455 kb on + strandat 114.455 kb on + strandat 114.455 kb on + strandat 114.455 kb on + strandat 114.456 kb on - strandat 114.586 kb on + strandat 114.656 kb on + strandat 114.656 kb on + strandat 114.656 kb on + strandat 114.657 kb on - strandat 114.979 kb on - strand, within H281DRAFT_04400at 114.984 kb on + strand, within H281DRAFT_04400at 115.016 kb on + strandat 115.059 kb on + strand, within H281DRAFT_04400at 115.061 kb on + strand, within H281DRAFT_04400at 115.131 kb on + strand, within H281DRAFT_04400at 115.132 kb on - strand, within H281DRAFT_04400at 115.132 kb on - strand, within H281DRAFT_04400at 115.149 kb on - strand, within H281DRAFT_04400at 115.203 kb on + strand, within H281DRAFT_04400at 115.204 kb on - strand, within H281DRAFT_04400at 115.204 kb on - strand, within H281DRAFT_04400at 115.326 kb on + strand, within H281DRAFT_04400at 115.326 kb on + strand, within H281DRAFT_04400at 115.327 kb on - strand, within H281DRAFT_04400at 115.327 kb on - strand, within H281DRAFT_04400at 115.330 kb on + strand, within H281DRAFT_04400at 115.330 kb on + strand, within H281DRAFT_04400at 115.330 kb on + strand, within H281DRAFT_04400at 115.330 kb on + strand, within H281DRAFT_04400at 115.330 kb on + strand, within H281DRAFT_04400at 115.331 kb on - strand, within H281DRAFT_04400at 115.331 kb on - strand, within H281DRAFT_04400at 115.331 kb on - strand, within H281DRAFT_04400at 115.331 kb on - strand, within H281DRAFT_04400at 115.331 kb on - strand, within H281DRAFT_04400at 115.331 kb on - strand, within H281DRAFT_04400at 115.331 kb on - strand, within H281DRAFT_04400at 115.362 kb on + strand, within H281DRAFT_04400at 115.362 kb on + strand, within H281DRAFT_04400at 115.362 kb on + strand, within H281DRAFT_04400at 115.362 kb on + strand, within H281DRAFT_04400at 115.363 kb on - strand, within H281DRAFT_04400at 115.413 kb on + strand, within H281DRAFT_04400at 115.450 kb on - strand, within H281DRAFT_04400at 115.509 kb on - strand, within H281DRAFT_04400at 115.575 kb on - strand, within H281DRAFT_04400at 115.668 kb on + strand, within H281DRAFT_04400at 115.668 kb on + strand, within H281DRAFT_04400at 115.668 kb on + strand, within H281DRAFT_04400at 115.669 kb on - strand, within H281DRAFT_04400at 115.669 kb on - strand, within H281DRAFT_04400at 116.295 kb on + strandat 116.295 kb on + strandat 116.296 kb on - strandat 116.296 kb on - strandat 116.373 kb on - strandat 116.498 kb on + strandat 116.498 kb on + strandat 116.499 kb on - strandat 116.556 kb on + strandat 116.556 kb on + strandat 116.556 kb on + strandat 116.556 kb on + strandat 116.556 kb on + strandat 116.556 kb on + strandat 116.557 kb on - strandat 116.557 kb on - strandat 116.557 kb on - strandat 116.557 kb on - strandat 116.557 kb on - strandat 116.557 kb on - strandat 116.557 kb on - strandat 116.594 kb on + strandat 116.690 kb on - strand, within H281DRAFT_04401at 116.690 kb on - strand, within H281DRAFT_04401at 116.692 kb on + strand, within H281DRAFT_04401at 116.692 kb on + strand, within H281DRAFT_04401at 116.692 kb on + strand, within H281DRAFT_04401at 116.693 kb on - strand, within H281DRAFT_04401at 117.107 kb on + strand, within H281DRAFT_04401at 117.112 kb on + strand, within H281DRAFT_04401at 117.112 kb on + strand, within H281DRAFT_04401at 117.112 kb on + strand, within H281DRAFT_04401at 117.112 kb on + strand, within H281DRAFT_04401at 117.171 kb on + strand, within H281DRAFT_04401at 117.171 kb on + strand, within H281DRAFT_04401

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-furoic (C)
remove
113,660 + +0.2
113,661 - -0.0
113,661 - +0.6
113,681 - -0.4
113,716 - +0.2
113,720 - -1.4
113,745 + +0.1
113,745 + +0.1
113,745 + +0.4
113,745 + -1.0
113,745 + -0.3
113,745 + +1.3
113,746 - +0.1
113,746 - -0.8
113,746 - -0.1
113,818 - H281DRAFT_04399 0.15 -0.4
113,854 + H281DRAFT_04399 0.19 +0.0
113,926 - H281DRAFT_04399 0.29 -1.6
114,020 - H281DRAFT_04399 0.40 -0.2
114,057 + H281DRAFT_04399 0.45 -1.4
114,226 - H281DRAFT_04399 0.66 -0.5
114,433 + +0.4
114,434 - -0.1
114,434 - -0.0
114,455 + -0.1
114,455 + +0.1
114,455 + +0.5
114,455 + -0.8
114,455 + -0.8
114,456 - -1.5
114,586 + +0.4
114,656 + +0.0
114,656 + +0.2
114,656 + +0.1
114,657 - +0.6
114,979 - H281DRAFT_04400 0.20 +0.8
114,984 + H281DRAFT_04400 0.20 +0.5
115,016 + +1.9
115,059 + H281DRAFT_04400 0.25 +0.6
115,061 + H281DRAFT_04400 0.25 +0.3
115,131 + H281DRAFT_04400 0.29 -0.6
115,132 - H281DRAFT_04400 0.29 +0.8
115,132 - H281DRAFT_04400 0.29 +0.3
115,149 - H281DRAFT_04400 0.30 +0.2
115,203 + H281DRAFT_04400 0.34 +0.5
115,204 - H281DRAFT_04400 0.34 +0.2
115,204 - H281DRAFT_04400 0.34 -0.1
115,326 + H281DRAFT_04400 0.41 +0.5
115,326 + H281DRAFT_04400 0.41 +0.4
115,327 - H281DRAFT_04400 0.41 +1.4
115,327 - H281DRAFT_04400 0.41 +0.0
115,330 + H281DRAFT_04400 0.41 +0.8
115,330 + H281DRAFT_04400 0.41 +1.1
115,330 + H281DRAFT_04400 0.41 +0.3
115,330 + H281DRAFT_04400 0.41 -0.1
115,330 + H281DRAFT_04400 0.41 +0.9
115,331 - H281DRAFT_04400 0.41 +0.2
115,331 - H281DRAFT_04400 0.41 +0.7
115,331 - H281DRAFT_04400 0.41 +0.2
115,331 - H281DRAFT_04400 0.41 +0.6
115,331 - H281DRAFT_04400 0.41 +0.1
115,331 - H281DRAFT_04400 0.41 +0.3
115,331 - H281DRAFT_04400 0.41 +0.4
115,362 + H281DRAFT_04400 0.43 +0.8
115,362 + H281DRAFT_04400 0.43 +0.7
115,362 + H281DRAFT_04400 0.43 +0.6
115,362 + H281DRAFT_04400 0.43 +0.6
115,363 - H281DRAFT_04400 0.43 +0.4
115,413 + H281DRAFT_04400 0.46 +0.6
115,450 - H281DRAFT_04400 0.49 +1.0
115,509 - H281DRAFT_04400 0.52 +0.6
115,575 - H281DRAFT_04400 0.56 +0.5
115,668 + H281DRAFT_04400 0.62 +0.6
115,668 + H281DRAFT_04400 0.62 -0.5
115,668 + H281DRAFT_04400 0.62 +0.2
115,669 - H281DRAFT_04400 0.62 +0.7
115,669 - H281DRAFT_04400 0.62 +0.2
116,295 + -0.6
116,295 + +0.1
116,296 - +0.3
116,296 - -0.1
116,373 - +0.6
116,498 + +0.5
116,498 + -0.1
116,499 - -0.0
116,556 + -0.5
116,556 + -0.1
116,556 + -0.1
116,556 + -1.0
116,556 + +0.3
116,556 + -0.1
116,557 - -0.3
116,557 - -0.2
116,557 - -0.3
116,557 - +0.3
116,557 - +0.5
116,557 - -0.2
116,557 - +0.2
116,594 + -0.2
116,690 - H281DRAFT_04401 0.15 -0.3
116,690 - H281DRAFT_04401 0.15 -0.1
116,692 + H281DRAFT_04401 0.16 -0.2
116,692 + H281DRAFT_04401 0.16 -0.7
116,692 + H281DRAFT_04401 0.16 +0.0
116,693 - H281DRAFT_04401 0.16 -1.8
117,107 + H281DRAFT_04401 0.49 -0.1
117,112 + H281DRAFT_04401 0.49 -0.1
117,112 + H281DRAFT_04401 0.49 -0.0
117,112 + H281DRAFT_04401 0.49 +0.7
117,112 + H281DRAFT_04401 0.49 +0.2
117,171 + H281DRAFT_04401 0.54 -0.7
117,171 + H281DRAFT_04401 0.54 +0.6

Or see this region's nucleotide sequence