Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03684

Experiment: 2-furoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03683 and H281DRAFT_03684 are separated by 107 nucleotidesH281DRAFT_03684 and H281DRAFT_03685 are separated by 39 nucleotidesH281DRAFT_03685 and H281DRAFT_03686 are separated by 118 nucleotides H281DRAFT_03683: H281DRAFT_03683 - transcriptional regulator, LysR family, at 197,935 to 198,801 _03683 H281DRAFT_03684: H281DRAFT_03684 - Protein N-acetyltransferase, RimJ/RimL family, at 198,909 to 199,448 _03684 H281DRAFT_03685: H281DRAFT_03685 - Protein N-acetyltransferase, RimJ/RimL family, at 199,488 to 200,225 _03685 H281DRAFT_03686: H281DRAFT_03686 - GntR family transcriptional regulator / MocR family aminotransferase, at 200,344 to 201,855 _03686 Position (kb) 198 199 200Strain fitness (log2 ratio) -2 -1 0 1at 198.244 kb on + strand, within H281DRAFT_03683at 198.244 kb on + strand, within H281DRAFT_03683at 198.246 kb on + strand, within H281DRAFT_03683at 198.495 kb on - strand, within H281DRAFT_03683at 198.495 kb on - strand, within H281DRAFT_03683at 198.878 kb on + strandat 198.878 kb on + strandat 198.952 kb on + strandat 199.074 kb on + strand, within H281DRAFT_03684at 199.168 kb on - strand, within H281DRAFT_03684at 199.395 kb on + strandat 199.395 kb on + strandat 199.395 kb on + strandat 199.396 kb on - strandat 199.396 kb on - strandat 199.467 kb on + strandat 199.467 kb on + strandat 199.478 kb on - strandat 199.481 kb on + strandat 199.482 kb on - strandat 199.594 kb on + strand, within H281DRAFT_03685at 199.666 kb on + strand, within H281DRAFT_03685at 199.700 kb on + strand, within H281DRAFT_03685at 199.701 kb on - strand, within H281DRAFT_03685at 199.701 kb on - strand, within H281DRAFT_03685at 199.701 kb on - strand, within H281DRAFT_03685at 199.792 kb on + strand, within H281DRAFT_03685at 199.792 kb on + strand, within H281DRAFT_03685at 199.792 kb on + strand, within H281DRAFT_03685at 199.792 kb on + strand, within H281DRAFT_03685at 199.793 kb on - strand, within H281DRAFT_03685at 199.793 kb on - strand, within H281DRAFT_03685at 199.839 kb on - strand, within H281DRAFT_03685at 199.951 kb on + strand, within H281DRAFT_03685at 199.951 kb on + strand, within H281DRAFT_03685at 200.025 kb on + strand, within H281DRAFT_03685at 200.026 kb on - strand, within H281DRAFT_03685at 200.035 kb on + strand, within H281DRAFT_03685at 200.126 kb on - strand, within H281DRAFT_03685at 200.210 kb on + strandat 200.210 kb on + strandat 200.297 kb on - strandat 200.301 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-furoic (C)
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198,244 + H281DRAFT_03683 0.36 +0.6
198,244 + H281DRAFT_03683 0.36 +0.6
198,246 + H281DRAFT_03683 0.36 +0.4
198,495 - H281DRAFT_03683 0.65 +0.1
198,495 - H281DRAFT_03683 0.65 -0.4
198,878 + -0.4
198,878 + +1.6
198,952 + +0.5
199,074 + H281DRAFT_03684 0.31 +1.0
199,168 - H281DRAFT_03684 0.48 +0.7
199,395 + -0.4
199,395 + +0.5
199,395 + +0.4
199,396 - -0.9
199,396 - +1.6
199,467 + -0.0
199,467 + +0.8
199,478 - +0.2
199,481 + -0.1
199,482 - +0.7
199,594 + H281DRAFT_03685 0.14 +0.1
199,666 + H281DRAFT_03685 0.24 +0.1
199,700 + H281DRAFT_03685 0.29 -1.5
199,701 - H281DRAFT_03685 0.29 +0.4
199,701 - H281DRAFT_03685 0.29 -0.1
199,701 - H281DRAFT_03685 0.29 +0.6
199,792 + H281DRAFT_03685 0.41 -0.8
199,792 + H281DRAFT_03685 0.41 +0.2
199,792 + H281DRAFT_03685 0.41 +0.1
199,792 + H281DRAFT_03685 0.41 +0.6
199,793 - H281DRAFT_03685 0.41 -0.2
199,793 - H281DRAFT_03685 0.41 +0.5
199,839 - H281DRAFT_03685 0.48 -0.9
199,951 + H281DRAFT_03685 0.63 +0.6
199,951 + H281DRAFT_03685 0.63 -0.0
200,025 + H281DRAFT_03685 0.73 -2.1
200,026 - H281DRAFT_03685 0.73 +0.2
200,035 + H281DRAFT_03685 0.74 -0.8
200,126 - H281DRAFT_03685 0.86 +0.2
200,210 + +0.2
200,210 + -0.2
200,297 - -0.4
200,301 + +0.3

Or see this region's nucleotide sequence