Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01813

Experiment: 2-furoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01811 and H281DRAFT_01812 are separated by 100 nucleotidesH281DRAFT_01812 and H281DRAFT_01813 are separated by 102 nucleotidesH281DRAFT_01813 and H281DRAFT_01814 are separated by 110 nucleotidesH281DRAFT_01814 and H281DRAFT_01815 overlap by 4 nucleotides H281DRAFT_01811: H281DRAFT_01811 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 712,587 to 713,363 _01811 H281DRAFT_01812: H281DRAFT_01812 - Short-chain dehydrogenase, at 713,464 to 714,213 _01812 H281DRAFT_01813: H281DRAFT_01813 - transcriptional regulator, AraC family, at 714,316 to 715,236 _01813 H281DRAFT_01814: H281DRAFT_01814 - transcriptional regulator, XRE family with cupin sensor, at 715,347 to 715,937 _01814 H281DRAFT_01815: H281DRAFT_01815 - L-amino acid N-acyltransferase YncA, at 715,934 to 716,464 _01815 Position (kb) 714 715 716Strain fitness (log2 ratio) -1 0 1at 713.593 kb on - strand, within H281DRAFT_01812at 713.947 kb on + strand, within H281DRAFT_01812at 714.198 kb on + strandat 714.253 kb on + strandat 714.254 kb on - strandat 714.433 kb on + strand, within H281DRAFT_01813at 714.434 kb on - strand, within H281DRAFT_01813at 715.045 kb on + strand, within H281DRAFT_01813at 715.636 kb on + strand, within H281DRAFT_01814at 715.637 kb on - strand, within H281DRAFT_01814at 715.663 kb on - strand, within H281DRAFT_01814at 715.762 kb on + strandat 715.887 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-furoic (C)
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713,593 - H281DRAFT_01812 0.17 -0.8
713,947 + H281DRAFT_01812 0.64 -0.1
714,198 + -0.1
714,253 + +0.1
714,254 - +0.0
714,433 + H281DRAFT_01813 0.13 +0.0
714,434 - H281DRAFT_01813 0.13 -0.6
715,045 + H281DRAFT_01813 0.79 +0.3
715,636 + H281DRAFT_01814 0.49 -1.1
715,637 - H281DRAFT_01814 0.49 -0.8
715,663 - H281DRAFT_01814 0.53 +0.1
715,762 + +1.4
715,887 + -0.3

Or see this region's nucleotide sequence