Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01426

Experiment: 2-furoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01425 and H281DRAFT_01426 are separated by 107 nucleotidesH281DRAFT_01426 and H281DRAFT_01427 are separated by 190 nucleotides H281DRAFT_01425: H281DRAFT_01425 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 280,766 to 281,509 _01425 H281DRAFT_01426: H281DRAFT_01426 - transcriptional regulator, TetR family, at 281,617 to 282,267 _01426 H281DRAFT_01427: H281DRAFT_01427 - hypothetical protein, at 282,458 to 282,934 _01427 Position (kb) 281 282 283Strain fitness (log2 ratio) -1 0 1at 280.678 kb on + strandat 280.680 kb on + strandat 280.767 kb on + strandat 280.768 kb on - strandat 280.768 kb on - strandat 280.889 kb on - strand, within H281DRAFT_01425at 281.495 kb on + strandat 281.804 kb on + strand, within H281DRAFT_01426at 281.805 kb on - strand, within H281DRAFT_01426at 281.903 kb on - strand, within H281DRAFT_01426at 282.265 kb on + strandat 282.940 kb on - strandat 283.215 kb on + strandat 283.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-furoic (C)
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280,678 + +0.9
280,680 + +0.1
280,767 + -0.3
280,768 - -0.1
280,768 - -0.5
280,889 - H281DRAFT_01425 0.17 -1.0
281,495 + -0.7
281,804 + H281DRAFT_01426 0.29 +0.1
281,805 - H281DRAFT_01426 0.29 +0.4
281,903 - H281DRAFT_01426 0.44 +1.4
282,265 + -1.0
282,940 - -0.2
283,215 + +0.1
283,216 - +0.5

Or see this region's nucleotide sequence