Experiment: 2-furoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01260 and H281DRAFT_01261 overlap by 14 nucleotides H281DRAFT_01261 and H281DRAFT_01262 are separated by 16 nucleotides H281DRAFT_01262 and H281DRAFT_01263 overlap by 4 nucleotides
H281DRAFT_01260: H281DRAFT_01260 - putative spermidine/putrescine transport system ATP-binding protein, at 94,399 to 95,478
_01260
H281DRAFT_01261: H281DRAFT_01261 - putative spermidine/putrescine transport system permease protein, at 95,465 to 96,337
_01261
H281DRAFT_01262: H281DRAFT_01262 - putative spermidine/putrescine transport system permease protein, at 96,354 to 97,151
_01262
H281DRAFT_01263: H281DRAFT_01263 - Glycine/D-amino acid oxidase (deaminating), at 97,148 to 98,299
_01263
Position (kb) 96
97
98 Strain fitness (log2 ratio) -1
0
1 at 95.547 kb on + strand at 95.660 kb on + strand, within H281DRAFT_01261 at 95.664 kb on - strand, within H281DRAFT_01261 at 97.014 kb on + strand, within H281DRAFT_01262 at 97.203 kb on + strand at 97.236 kb on - strand at 97.432 kb on - strand, within H281DRAFT_01263 at 97.773 kb on - strand, within H281DRAFT_01263 at 97.773 kb on - strand, within H281DRAFT_01263 at 97.996 kb on + strand, within H281DRAFT_01263 at 98.093 kb on + strand, within H281DRAFT_01263 at 98.094 kb on - strand, within H281DRAFT_01263
Per-strain Table
Position Strand Gene LocusTag Fraction 2-furoic (C) remove 95,547 + +0.2 95,660 + H281DRAFT_01261 0.22 +0.2 95,664 - H281DRAFT_01261 0.23 +0.5 97,014 + H281DRAFT_01262 0.83 +0.7 97,203 + -0.3 97,236 - -0.7 97,432 - H281DRAFT_01263 0.25 -0.2 97,773 - H281DRAFT_01263 0.54 -0.5 97,773 - H281DRAFT_01263 0.54 -0.5 97,996 + H281DRAFT_01263 0.74 -0.1 98,093 + H281DRAFT_01263 0.82 -1.4 98,094 - H281DRAFT_01263 0.82 +0.1
Or see this region's nucleotide sequence