Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06213

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06212 and H281DRAFT_06213 are separated by 138 nucleotidesH281DRAFT_06213 and H281DRAFT_06214 are separated by 36 nucleotides H281DRAFT_06212: H281DRAFT_06212 - Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains, at 108,279 to 109,454 _06212 H281DRAFT_06213: H281DRAFT_06213 - hypothetical protein, at 109,593 to 109,715 _06213 H281DRAFT_06214: H281DRAFT_06214 - PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3), at 109,752 to 112,100 _06214 Position (kb) 109 110Strain fitness (log2 ratio) -2 -1 0 1at 108.648 kb on + strand, within H281DRAFT_06212at 108.648 kb on + strand, within H281DRAFT_06212at 108.649 kb on - strand, within H281DRAFT_06212at 108.649 kb on - strand, within H281DRAFT_06212at 108.703 kb on + strand, within H281DRAFT_06212at 108.704 kb on - strand, within H281DRAFT_06212at 108.720 kb on - strand, within H281DRAFT_06212at 108.720 kb on - strand, within H281DRAFT_06212at 108.723 kb on + strand, within H281DRAFT_06212at 108.723 kb on + strand, within H281DRAFT_06212at 108.723 kb on + strand, within H281DRAFT_06212at 108.723 kb on + strand, within H281DRAFT_06212at 108.723 kb on + strand, within H281DRAFT_06212at 108.724 kb on - strand, within H281DRAFT_06212at 108.724 kb on - strand, within H281DRAFT_06212at 108.724 kb on - strand, within H281DRAFT_06212at 108.727 kb on + strand, within H281DRAFT_06212at 108.779 kb on + strand, within H281DRAFT_06212at 108.954 kb on + strand, within H281DRAFT_06212at 108.979 kb on + strand, within H281DRAFT_06212at 108.980 kb on - strand, within H281DRAFT_06212at 108.993 kb on + strand, within H281DRAFT_06212at 108.993 kb on + strand, within H281DRAFT_06212at 108.993 kb on + strand, within H281DRAFT_06212at 108.993 kb on + strand, within H281DRAFT_06212at 108.994 kb on - strand, within H281DRAFT_06212at 109.027 kb on + strand, within H281DRAFT_06212at 109.028 kb on - strand, within H281DRAFT_06212at 109.072 kb on + strand, within H281DRAFT_06212at 109.072 kb on + strand, within H281DRAFT_06212at 109.072 kb on + strand, within H281DRAFT_06212at 109.072 kb on + strand, within H281DRAFT_06212at 109.072 kb on + strand, within H281DRAFT_06212at 109.072 kb on + strand, within H281DRAFT_06212at 109.074 kb on + strand, within H281DRAFT_06212at 109.074 kb on + strand, within H281DRAFT_06212at 109.074 kb on + strand, within H281DRAFT_06212at 109.075 kb on - strand, within H281DRAFT_06212at 109.075 kb on - strand, within H281DRAFT_06212at 109.075 kb on - strand, within H281DRAFT_06212at 109.149 kb on + strand, within H281DRAFT_06212at 109.158 kb on + strand, within H281DRAFT_06212at 109.158 kb on + strand, within H281DRAFT_06212at 109.158 kb on + strand, within H281DRAFT_06212at 109.158 kb on + strand, within H281DRAFT_06212at 109.158 kb on + strand, within H281DRAFT_06212at 109.159 kb on - strand, within H281DRAFT_06212at 109.159 kb on - strand, within H281DRAFT_06212at 109.159 kb on - strand, within H281DRAFT_06212at 109.159 kb on - strand, within H281DRAFT_06212at 109.159 kb on - strand, within H281DRAFT_06212at 109.159 kb on - strand, within H281DRAFT_06212at 109.159 kb on - strand, within H281DRAFT_06212at 109.159 kb on - strand, within H281DRAFT_06212at 109.159 kb on - strand, within H281DRAFT_06212at 109.236 kb on - strand, within H281DRAFT_06212at 109.236 kb on - strand, within H281DRAFT_06212at 109.303 kb on + strand, within H281DRAFT_06212at 109.303 kb on + strand, within H281DRAFT_06212at 109.332 kb on - strand, within H281DRAFT_06212at 109.406 kb on - strandat 109.406 kb on - strandat 109.406 kb on - strandat 109.406 kb on - strandat 109.595 kb on - strandat 109.595 kb on - strandat 109.617 kb on - strand, within H281DRAFT_06213at 109.646 kb on + strand, within H281DRAFT_06213at 109.672 kb on - strand, within H281DRAFT_06213at 109.798 kb on + strandat 110.058 kb on + strand, within H281DRAFT_06214at 110.058 kb on + strand, within H281DRAFT_06214at 110.061 kb on + strand, within H281DRAFT_06214at 110.062 kb on - strand, within H281DRAFT_06214at 110.138 kb on + strand, within H281DRAFT_06214at 110.138 kb on + strand, within H281DRAFT_06214at 110.142 kb on + strand, within H281DRAFT_06214at 110.142 kb on + strand, within H281DRAFT_06214at 110.142 kb on + strand, within H281DRAFT_06214at 110.142 kb on + strand, within H281DRAFT_06214at 110.143 kb on - strand, within H281DRAFT_06214at 110.143 kb on - strand, within H281DRAFT_06214at 110.143 kb on - strand, within H281DRAFT_06214at 110.143 kb on - strand, within H281DRAFT_06214at 110.143 kb on - strand, within H281DRAFT_06214at 110.143 kb on - strand, within H281DRAFT_06214at 110.143 kb on - strand, within H281DRAFT_06214at 110.143 kb on - strand, within H281DRAFT_06214at 110.144 kb on + strand, within H281DRAFT_06214at 110.185 kb on + strand, within H281DRAFT_06214at 110.221 kb on - strand, within H281DRAFT_06214at 110.221 kb on - strand, within H281DRAFT_06214at 110.255 kb on + strand, within H281DRAFT_06214at 110.271 kb on - strand, within H281DRAFT_06214at 110.273 kb on - strand, within H281DRAFT_06214at 110.294 kb on + strand, within H281DRAFT_06214at 110.295 kb on - strand, within H281DRAFT_06214at 110.384 kb on + strand, within H281DRAFT_06214at 110.385 kb on - strand, within H281DRAFT_06214at 110.466 kb on - strand, within H281DRAFT_06214at 110.477 kb on + strand, within H281DRAFT_06214at 110.477 kb on + strand, within H281DRAFT_06214at 110.590 kb on + strand, within H281DRAFT_06214at 110.606 kb on + strand, within H281DRAFT_06214at 110.607 kb on - strand, within H281DRAFT_06214at 110.607 kb on - strand, within H281DRAFT_06214at 110.624 kb on + strand, within H281DRAFT_06214at 110.627 kb on - strand, within H281DRAFT_06214at 110.627 kb on - strand, within H281DRAFT_06214at 110.627 kb on - strand, within H281DRAFT_06214at 110.636 kb on + strand, within H281DRAFT_06214at 110.636 kb on + strand, within H281DRAFT_06214at 110.636 kb on + strand, within H281DRAFT_06214at 110.637 kb on - strand, within H281DRAFT_06214at 110.637 kb on - strand, within H281DRAFT_06214at 110.637 kb on - strand, within H281DRAFT_06214at 110.666 kb on - strand, within H281DRAFT_06214at 110.666 kb on - strand, within H281DRAFT_06214

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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108,648 + H281DRAFT_06212 0.31 +0.2
108,648 + H281DRAFT_06212 0.31 -0.1
108,649 - H281DRAFT_06212 0.31 +0.6
108,649 - H281DRAFT_06212 0.31 +0.4
108,703 + H281DRAFT_06212 0.36 +0.1
108,704 - H281DRAFT_06212 0.36 +0.1
108,720 - H281DRAFT_06212 0.38 +0.9
108,720 - H281DRAFT_06212 0.38 -0.2
108,723 + H281DRAFT_06212 0.38 -0.7
108,723 + H281DRAFT_06212 0.38 +0.9
108,723 + H281DRAFT_06212 0.38 +0.2
108,723 + H281DRAFT_06212 0.38 -0.1
108,723 + H281DRAFT_06212 0.38 +0.1
108,724 - H281DRAFT_06212 0.38 -1.6
108,724 - H281DRAFT_06212 0.38 +0.3
108,724 - H281DRAFT_06212 0.38 -1.0
108,727 + H281DRAFT_06212 0.38 -0.4
108,779 + H281DRAFT_06212 0.43 +0.1
108,954 + H281DRAFT_06212 0.57 -0.1
108,979 + H281DRAFT_06212 0.60 +0.1
108,980 - H281DRAFT_06212 0.60 -0.1
108,993 + H281DRAFT_06212 0.61 -0.2
108,993 + H281DRAFT_06212 0.61 +0.4
108,993 + H281DRAFT_06212 0.61 +0.4
108,993 + H281DRAFT_06212 0.61 -0.3
108,994 - H281DRAFT_06212 0.61 +0.4
109,027 + H281DRAFT_06212 0.64 +0.1
109,028 - H281DRAFT_06212 0.64 -0.8
109,072 + H281DRAFT_06212 0.67 -0.2
109,072 + H281DRAFT_06212 0.67 -0.3
109,072 + H281DRAFT_06212 0.67 +1.1
109,072 + H281DRAFT_06212 0.67 +0.1
109,072 + H281DRAFT_06212 0.67 +0.6
109,072 + H281DRAFT_06212 0.67 +0.6
109,074 + H281DRAFT_06212 0.68 +0.4
109,074 + H281DRAFT_06212 0.68 -1.3
109,074 + H281DRAFT_06212 0.68 +0.3
109,075 - H281DRAFT_06212 0.68 -0.3
109,075 - H281DRAFT_06212 0.68 -1.4
109,075 - H281DRAFT_06212 0.68 +0.9
109,149 + H281DRAFT_06212 0.74 +1.6
109,158 + H281DRAFT_06212 0.75 +0.6
109,158 + H281DRAFT_06212 0.75 +0.2
109,158 + H281DRAFT_06212 0.75 +0.5
109,158 + H281DRAFT_06212 0.75 +0.1
109,158 + H281DRAFT_06212 0.75 -0.2
109,159 - H281DRAFT_06212 0.75 -0.1
109,159 - H281DRAFT_06212 0.75 +0.9
109,159 - H281DRAFT_06212 0.75 -1.5
109,159 - H281DRAFT_06212 0.75 +0.4
109,159 - H281DRAFT_06212 0.75 -0.1
109,159 - H281DRAFT_06212 0.75 -0.5
109,159 - H281DRAFT_06212 0.75 +0.3
109,159 - H281DRAFT_06212 0.75 -1.2
109,159 - H281DRAFT_06212 0.75 -0.9
109,236 - H281DRAFT_06212 0.81 -0.6
109,236 - H281DRAFT_06212 0.81 -0.2
109,303 + H281DRAFT_06212 0.87 +0.1
109,303 + H281DRAFT_06212 0.87 +0.5
109,332 - H281DRAFT_06212 0.90 +0.1
109,406 - +0.0
109,406 - -2.4
109,406 - -1.9
109,406 - +0.6
109,595 - -0.1
109,595 - +1.5
109,617 - H281DRAFT_06213 0.20 +0.8
109,646 + H281DRAFT_06213 0.43 +0.7
109,672 - H281DRAFT_06213 0.64 -0.1
109,798 + -0.4
110,058 + H281DRAFT_06214 0.13 -0.2
110,058 + H281DRAFT_06214 0.13 +0.2
110,061 + H281DRAFT_06214 0.13 -1.0
110,062 - H281DRAFT_06214 0.13 +1.3
110,138 + H281DRAFT_06214 0.16 +0.2
110,138 + H281DRAFT_06214 0.16 -0.9
110,142 + H281DRAFT_06214 0.17 +0.6
110,142 + H281DRAFT_06214 0.17 +0.6
110,142 + H281DRAFT_06214 0.17 -0.4
110,142 + H281DRAFT_06214 0.17 -0.5
110,143 - H281DRAFT_06214 0.17 -0.1
110,143 - H281DRAFT_06214 0.17 +0.2
110,143 - H281DRAFT_06214 0.17 +0.3
110,143 - H281DRAFT_06214 0.17 +0.1
110,143 - H281DRAFT_06214 0.17 -0.1
110,143 - H281DRAFT_06214 0.17 -0.5
110,143 - H281DRAFT_06214 0.17 +0.3
110,143 - H281DRAFT_06214 0.17 -0.4
110,144 + H281DRAFT_06214 0.17 +1.1
110,185 + H281DRAFT_06214 0.18 +0.4
110,221 - H281DRAFT_06214 0.20 -0.1
110,221 - H281DRAFT_06214 0.20 +0.4
110,255 + H281DRAFT_06214 0.21 -0.1
110,271 - H281DRAFT_06214 0.22 +0.1
110,273 - H281DRAFT_06214 0.22 +0.9
110,294 + H281DRAFT_06214 0.23 +0.4
110,295 - H281DRAFT_06214 0.23 -0.6
110,384 + H281DRAFT_06214 0.27 -0.3
110,385 - H281DRAFT_06214 0.27 +1.1
110,466 - H281DRAFT_06214 0.30 -0.4
110,477 + H281DRAFT_06214 0.31 +0.6
110,477 + H281DRAFT_06214 0.31 -0.3
110,590 + H281DRAFT_06214 0.36 -0.1
110,606 + H281DRAFT_06214 0.36 +0.2
110,607 - H281DRAFT_06214 0.36 -0.4
110,607 - H281DRAFT_06214 0.36 +0.2
110,624 + H281DRAFT_06214 0.37 +0.1
110,627 - H281DRAFT_06214 0.37 +0.4
110,627 - H281DRAFT_06214 0.37 +0.5
110,627 - H281DRAFT_06214 0.37 -0.3
110,636 + H281DRAFT_06214 0.38 +1.0
110,636 + H281DRAFT_06214 0.38 +0.3
110,636 + H281DRAFT_06214 0.38 +1.2
110,637 - H281DRAFT_06214 0.38 -0.5
110,637 - H281DRAFT_06214 0.38 +0.2
110,637 - H281DRAFT_06214 0.38 +0.9
110,666 - H281DRAFT_06214 0.39 +0.5
110,666 - H281DRAFT_06214 0.39 +0.3

Or see this region's nucleotide sequence