Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06203 and H281DRAFT_06204 are separated by 1 nucleotides H281DRAFT_06204 and H281DRAFT_06205 are separated by 182 nucleotides H281DRAFT_06205 and H281DRAFT_06206 are separated by 825 nucleotides
H281DRAFT_06203: H281DRAFT_06203 - PAS domain S-box-containing protein, at 94,124 to 95,680
_06203
H281DRAFT_06204: H281DRAFT_06204 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 95,682 to 95,999
_06204
H281DRAFT_06205: H281DRAFT_06205 - transcriptional regulator, GntR family, at 96,182 to 96,907
_06205
H281DRAFT_06206: H281DRAFT_06206 - 2-methylcitrate dehydratase PrpD, at 97,733 to 99,223
_06206
Position (kb) 96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 95.209 kb on + strand, within H281DRAFT_06203 at 95.305 kb on - strand, within H281DRAFT_06203 at 95.398 kb on + strand, within H281DRAFT_06203 at 95.399 kb on - strand, within H281DRAFT_06203 at 95.579 kb on + strand at 95.638 kb on - strand at 95.638 kb on - strand at 95.638 kb on - strand at 95.808 kb on - strand, within H281DRAFT_06204 at 95.808 kb on - strand, within H281DRAFT_06204 at 95.808 kb on - strand, within H281DRAFT_06204 at 95.808 kb on - strand, within H281DRAFT_06204 at 95.809 kb on + strand, within H281DRAFT_06204 at 95.809 kb on + strand, within H281DRAFT_06204 at 95.810 kb on - strand at 95.810 kb on - strand, within H281DRAFT_06204 at 95.810 kb on - strand, within H281DRAFT_06204 at 95.810 kb on - strand, within H281DRAFT_06204 at 95.956 kb on - strand, within H281DRAFT_06204 at 96.041 kb on + strand at 96.042 kb on - strand at 96.066 kb on - strand at 96.150 kb on + strand at 96.150 kb on + strand at 96.151 kb on - strand at 96.151 kb on - strand at 96.151 kb on - strand at 96.197 kb on - strand at 96.273 kb on - strand, within H281DRAFT_06205 at 96.332 kb on + strand, within H281DRAFT_06205 at 96.382 kb on + strand, within H281DRAFT_06205 at 96.383 kb on - strand, within H281DRAFT_06205 at 96.383 kb on - strand, within H281DRAFT_06205 at 96.383 kb on - strand, within H281DRAFT_06205 at 96.413 kb on - strand, within H281DRAFT_06205 at 96.499 kb on - strand, within H281DRAFT_06205 at 96.612 kb on + strand, within H281DRAFT_06205 at 96.626 kb on + strand, within H281DRAFT_06205 at 96.626 kb on + strand, within H281DRAFT_06205 at 96.921 kb on - strand at 96.925 kb on - strand at 97.063 kb on + strand at 97.064 kb on - strand at 97.064 kb on - strand at 97.064 kb on - strand at 97.064 kb on - strand at 97.217 kb on - strand at 97.224 kb on + strand at 97.224 kb on + strand at 97.325 kb on + strand at 97.523 kb on - strand at 97.635 kb on - strand at 97.635 kb on - strand at 97.635 kb on - strand at 97.726 kb on + strand at 97.732 kb on + strand at 97.732 kb on + strand at 97.732 kb on + strand at 97.732 kb on + strand at 97.732 kb on + strand at 97.732 kb on + strand at 97.733 kb on - strand at 97.733 kb on - strand at 97.733 kb on - strand at 97.805 kb on - strand at 97.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 95,209 + H281DRAFT_06203 0.70 +0.4 95,305 - H281DRAFT_06203 0.76 +0.3 95,398 + H281DRAFT_06203 0.82 +0.0 95,399 - H281DRAFT_06203 0.82 -0.6 95,579 + -0.4 95,638 - +0.5 95,638 - +0.1 95,638 - -0.7 95,808 - H281DRAFT_06204 0.40 +1.4 95,808 - H281DRAFT_06204 0.40 -0.1 95,808 - H281DRAFT_06204 0.40 +0.4 95,808 - H281DRAFT_06204 0.40 +0.7 95,809 + H281DRAFT_06204 0.40 +1.0 95,809 + H281DRAFT_06204 0.40 -0.2 95,810 - +0.8 95,810 - H281DRAFT_06204 0.40 +0.8 95,810 - H281DRAFT_06204 0.40 +0.5 95,810 - H281DRAFT_06204 0.40 +0.8 95,956 - H281DRAFT_06204 0.86 +0.8 96,041 + +0.5 96,042 - -0.6 96,066 - +0.5 96,150 + -0.5 96,150 + -0.2 96,151 - -0.0 96,151 - +0.4 96,151 - -0.1 96,197 - +0.6 96,273 - H281DRAFT_06205 0.13 +0.1 96,332 + H281DRAFT_06205 0.21 +0.0 96,382 + H281DRAFT_06205 0.28 -1.8 96,383 - H281DRAFT_06205 0.28 -0.2 96,383 - H281DRAFT_06205 0.28 +0.3 96,383 - H281DRAFT_06205 0.28 -0.5 96,413 - H281DRAFT_06205 0.32 -0.8 96,499 - H281DRAFT_06205 0.44 -0.5 96,612 + H281DRAFT_06205 0.59 -0.6 96,626 + H281DRAFT_06205 0.61 -0.1 96,626 + H281DRAFT_06205 0.61 +0.1 96,921 - +0.9 96,925 - +0.4 97,063 + +2.0 97,064 - +0.9 97,064 - +1.2 97,064 - +0.6 97,064 - -0.5 97,217 - +0.4 97,224 + +0.3 97,224 + +0.1 97,325 + +0.1 97,523 - +0.2 97,635 - +1.4 97,635 - -0.4 97,635 - -0.5 97,726 + +0.8 97,732 + +0.2 97,732 + -0.4 97,732 + -0.1 97,732 + -0.2 97,732 + +1.0 97,732 + -0.2 97,733 - +0.4 97,733 - -0.2 97,733 - +0.2 97,805 - +0.9 97,810 + -0.1
Or see this region's nucleotide sequence