Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06153

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06152 and H281DRAFT_06153 are separated by 94 nucleotidesH281DRAFT_06153 and H281DRAFT_06154 are separated by 8 nucleotidesH281DRAFT_06154 and H281DRAFT_06155 are separated by 2 nucleotidesH281DRAFT_06155 and H281DRAFT_06156 overlap by 50 nucleotides H281DRAFT_06152: H281DRAFT_06152 - outer membrane lipoprotein SlyB, at 47,308 to 47,769 _06152 H281DRAFT_06153: H281DRAFT_06153 - hypothetical protein, at 47,864 to 48,256 _06153 H281DRAFT_06154: H281DRAFT_06154 - hypothetical protein, at 48,265 to 48,738 _06154 H281DRAFT_06155: H281DRAFT_06155 - hypothetical protein, at 48,741 to 48,860 _06155 H281DRAFT_06156: H281DRAFT_06156 - hypothetical protein, at 48,811 to 49,359 _06156 Position (kb) 47 48 49Strain fitness (log2 ratio) -1 0 1 2at 46.985 kb on + strandat 46.985 kb on + strandat 46.986 kb on - strandat 46.986 kb on - strandat 46.992 kb on + strandat 46.992 kb on + strandat 46.992 kb on + strandat 46.992 kb on + strandat 46.992 kb on + strandat 47.026 kb on - strandat 47.026 kb on - strandat 47.026 kb on - strandat 47.026 kb on - strandat 47.080 kb on - strandat 47.080 kb on - strandat 47.385 kb on + strand, within H281DRAFT_06152at 47.385 kb on + strand, within H281DRAFT_06152at 47.386 kb on - strand, within H281DRAFT_06152at 47.386 kb on - strand, within H281DRAFT_06152at 47.389 kb on + strand, within H281DRAFT_06152at 47.389 kb on + strand, within H281DRAFT_06152at 47.560 kb on + strand, within H281DRAFT_06152at 47.561 kb on - strand, within H281DRAFT_06152at 47.561 kb on - strand, within H281DRAFT_06152at 47.781 kb on + strandat 47.781 kb on + strandat 47.781 kb on + strandat 47.781 kb on + strandat 47.782 kb on - strandat 47.863 kb on + strandat 47.863 kb on + strandat 47.863 kb on + strandat 47.864 kb on - strandat 47.976 kb on + strand, within H281DRAFT_06153at 47.977 kb on - strand, within H281DRAFT_06153at 47.977 kb on - strand, within H281DRAFT_06153at 47.977 kb on - strand, within H281DRAFT_06153at 47.977 kb on - strand, within H281DRAFT_06153at 47.977 kb on - strand, within H281DRAFT_06153at 48.141 kb on + strand, within H281DRAFT_06153at 48.198 kb on - strand, within H281DRAFT_06153at 48.264 kb on + strandat 48.328 kb on + strand, within H281DRAFT_06154at 48.329 kb on - strand, within H281DRAFT_06154at 48.329 kb on - strand, within H281DRAFT_06154at 48.443 kb on + strand, within H281DRAFT_06154at 48.443 kb on + strand, within H281DRAFT_06154at 48.444 kb on - strand, within H281DRAFT_06154at 48.444 kb on - strand, within H281DRAFT_06154at 48.454 kb on - strand, within H281DRAFT_06154at 48.517 kb on - strand, within H281DRAFT_06154at 48.584 kb on + strand, within H281DRAFT_06154at 48.584 kb on + strand, within H281DRAFT_06154at 48.584 kb on + strand, within H281DRAFT_06154at 48.663 kb on + strand, within H281DRAFT_06154at 48.663 kb on + strand, within H281DRAFT_06154at 48.664 kb on - strand, within H281DRAFT_06154at 48.664 kb on - strand, within H281DRAFT_06154at 48.698 kb on + strandat 48.698 kb on + strandat 48.736 kb on + strandat 48.736 kb on + strandat 48.737 kb on - strandat 48.740 kb on + strandat 48.740 kb on + strandat 48.741 kb on - strandat 48.869 kb on + strandat 48.870 kb on - strand, within H281DRAFT_06156at 48.941 kb on + strand, within H281DRAFT_06156at 48.942 kb on - strand, within H281DRAFT_06156at 48.951 kb on + strand, within H281DRAFT_06156at 48.951 kb on + strand, within H281DRAFT_06156at 48.951 kb on + strand, within H281DRAFT_06156at 48.952 kb on - strand, within H281DRAFT_06156

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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46,985 + -0.4
46,985 + +0.3
46,986 - +0.8
46,986 - +0.2
46,992 + -1.1
46,992 + -0.3
46,992 + -0.1
46,992 + +1.5
46,992 + +0.4
47,026 - +0.2
47,026 - +0.6
47,026 - -0.4
47,026 - +0.3
47,080 - +0.6
47,080 - -1.0
47,385 + H281DRAFT_06152 0.17 -0.6
47,385 + H281DRAFT_06152 0.17 -0.3
47,386 - H281DRAFT_06152 0.17 +0.2
47,386 - H281DRAFT_06152 0.17 -0.1
47,389 + H281DRAFT_06152 0.18 -0.3
47,389 + H281DRAFT_06152 0.18 +0.5
47,560 + H281DRAFT_06152 0.55 -0.3
47,561 - H281DRAFT_06152 0.55 +0.1
47,561 - H281DRAFT_06152 0.55 +0.3
47,781 + -0.2
47,781 + +0.2
47,781 + +0.9
47,781 + +0.9
47,782 - +1.7
47,863 + -0.0
47,863 + -0.3
47,863 + +0.3
47,864 - -0.0
47,976 + H281DRAFT_06153 0.28 +0.8
47,977 - H281DRAFT_06153 0.29 +0.7
47,977 - H281DRAFT_06153 0.29 +0.4
47,977 - H281DRAFT_06153 0.29 +0.3
47,977 - H281DRAFT_06153 0.29 +0.6
47,977 - H281DRAFT_06153 0.29 +0.5
48,141 + H281DRAFT_06153 0.70 -0.9
48,198 - H281DRAFT_06153 0.85 +0.9
48,264 + -1.1
48,328 + H281DRAFT_06154 0.13 +0.6
48,329 - H281DRAFT_06154 0.14 +0.5
48,329 - H281DRAFT_06154 0.14 +0.1
48,443 + H281DRAFT_06154 0.38 +0.4
48,443 + H281DRAFT_06154 0.38 +0.8
48,444 - H281DRAFT_06154 0.38 -0.6
48,444 - H281DRAFT_06154 0.38 -0.0
48,454 - H281DRAFT_06154 0.40 +1.1
48,517 - H281DRAFT_06154 0.53 -0.0
48,584 + H281DRAFT_06154 0.67 -0.2
48,584 + H281DRAFT_06154 0.67 -0.0
48,584 + H281DRAFT_06154 0.67 -0.7
48,663 + H281DRAFT_06154 0.84 +0.1
48,663 + H281DRAFT_06154 0.84 +0.1
48,664 - H281DRAFT_06154 0.84 +0.3
48,664 - H281DRAFT_06154 0.84 -0.2
48,698 + -0.5
48,698 + +0.7
48,736 + +0.6
48,736 + -1.7
48,737 - +0.4
48,740 + +0.0
48,740 + +0.7
48,741 - +2.1
48,869 + +1.7
48,870 - H281DRAFT_06156 0.11 +0.3
48,941 + H281DRAFT_06156 0.24 -0.2
48,942 - H281DRAFT_06156 0.24 -0.3
48,951 + H281DRAFT_06156 0.26 +0.0
48,951 + H281DRAFT_06156 0.26 +0.1
48,951 + H281DRAFT_06156 0.26 -0.4
48,952 - H281DRAFT_06156 0.26 +0.6

Or see this region's nucleotide sequence