Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05873

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05871 and H281DRAFT_05872 are separated by 10 nucleotidesH281DRAFT_05872 and H281DRAFT_05873 overlap by 4 nucleotidesH281DRAFT_05873 and H281DRAFT_05874 are separated by 11 nucleotidesH281DRAFT_05874 and H281DRAFT_05875 are separated by 110 nucleotides H281DRAFT_05871: H281DRAFT_05871 - amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-), at 7,806 to 8,522 _05871 H281DRAFT_05872: H281DRAFT_05872 - amino acid ABC transporter membrane protein 2, PAAT family, at 8,533 to 9,177 _05872 H281DRAFT_05873: H281DRAFT_05873 - amino acid ABC transporter ATP-binding protein, PAAT family, at 9,174 to 9,926 _05873 H281DRAFT_05874: H281DRAFT_05874 - transcriptional regulator, IclR family, at 9,938 to 10,687 _05874 H281DRAFT_05875: H281DRAFT_05875 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 10,798 to 12,258 _05875 Position (kb) 9 10Strain fitness (log2 ratio) -1 0 1at 8.260 kb on - strand, within H281DRAFT_05871at 8.359 kb on - strand, within H281DRAFT_05871at 8.600 kb on + strand, within H281DRAFT_05872at 8.750 kb on - strand, within H281DRAFT_05872at 8.764 kb on + strand, within H281DRAFT_05872at 8.830 kb on + strand, within H281DRAFT_05872at 8.831 kb on - strand, within H281DRAFT_05872at 8.831 kb on - strand, within H281DRAFT_05872at 8.916 kb on - strand, within H281DRAFT_05872at 9.113 kb on - strandat 9.171 kb on + strandat 9.171 kb on + strandat 9.172 kb on - strandat 9.286 kb on + strand, within H281DRAFT_05873at 10.074 kb on - strand, within H281DRAFT_05874at 10.157 kb on + strand, within H281DRAFT_05874at 10.278 kb on - strand, within H281DRAFT_05874at 10.505 kb on + strand, within H281DRAFT_05874at 10.506 kb on - strand, within H281DRAFT_05874at 10.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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8,260 - H281DRAFT_05871 0.63 +0.9
8,359 - H281DRAFT_05871 0.77 -0.0
8,600 + H281DRAFT_05872 0.10 +0.5
8,750 - H281DRAFT_05872 0.34 +0.4
8,764 + H281DRAFT_05872 0.36 +0.5
8,830 + H281DRAFT_05872 0.46 +0.1
8,831 - H281DRAFT_05872 0.46 -0.2
8,831 - H281DRAFT_05872 0.46 -0.6
8,916 - H281DRAFT_05872 0.59 -0.3
9,113 - +0.7
9,171 + +0.9
9,171 + -0.2
9,172 - +0.0
9,286 + H281DRAFT_05873 0.15 +0.5
10,074 - H281DRAFT_05874 0.18 +0.3
10,157 + H281DRAFT_05874 0.29 +0.1
10,278 - H281DRAFT_05874 0.45 +0.3
10,505 + H281DRAFT_05874 0.76 +0.8
10,506 - H281DRAFT_05874 0.76 +0.1
10,653 + +0.4

Or see this region's nucleotide sequence