Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05539 and H281DRAFT_05540 overlap by 4 nucleotides H281DRAFT_05540 and H281DRAFT_05541 are separated by 12 nucleotides
H281DRAFT_05539: H281DRAFT_05539 - D-3-phosphoglycerate dehydrogenase, at 124,344 to 125,366
_05539
H281DRAFT_05540: H281DRAFT_05540 - transcriptional regulator, LacI family, at 125,363 to 126,427
_05540
H281DRAFT_05541: H281DRAFT_05541 - TRAP transporter, DctM subunit, at 126,440 to 128,383
_05541
Position (kb) 125
126
127 Strain fitness (log2 ratio) -1
0
1 at 124.405 kb on + strand at 124.406 kb on - strand at 124.476 kb on - strand, within H281DRAFT_05539 at 124.606 kb on - strand, within H281DRAFT_05539 at 124.608 kb on + strand, within H281DRAFT_05539 at 124.608 kb on + strand, within H281DRAFT_05539 at 124.715 kb on + strand, within H281DRAFT_05539 at 124.803 kb on + strand, within H281DRAFT_05539 at 124.958 kb on + strand, within H281DRAFT_05539 at 124.958 kb on + strand, within H281DRAFT_05539 at 125.074 kb on - strand, within H281DRAFT_05539 at 125.074 kb on - strand, within H281DRAFT_05539 at 125.267 kb on + strand at 125.268 kb on - strand at 125.424 kb on - strand at 126.134 kb on - strand, within H281DRAFT_05540 at 126.205 kb on - strand, within H281DRAFT_05540 at 126.205 kb on - strand, within H281DRAFT_05540 at 126.796 kb on - strand, within H281DRAFT_05541 at 126.923 kb on + strand, within H281DRAFT_05541 at 126.968 kb on - strand, within H281DRAFT_05541 at 126.968 kb on - strand, within H281DRAFT_05541 at 126.978 kb on - strand, within H281DRAFT_05541 at 127.202 kb on + strand, within H281DRAFT_05541 at 127.349 kb on + strand, within H281DRAFT_05541
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 124,405 + +0.5 124,406 - +1.2 124,476 - H281DRAFT_05539 0.13 -0.5 124,606 - H281DRAFT_05539 0.26 +0.1 124,608 + H281DRAFT_05539 0.26 +0.1 124,608 + H281DRAFT_05539 0.26 +0.8 124,715 + H281DRAFT_05539 0.36 +0.1 124,803 + H281DRAFT_05539 0.45 -0.6 124,958 + H281DRAFT_05539 0.60 +0.9 124,958 + H281DRAFT_05539 0.60 -0.2 125,074 - H281DRAFT_05539 0.71 -0.2 125,074 - H281DRAFT_05539 0.71 +0.3 125,267 + +1.4 125,268 - -0.3 125,424 - -0.2 126,134 - H281DRAFT_05540 0.72 +0.3 126,205 - H281DRAFT_05540 0.79 +0.6 126,205 - H281DRAFT_05540 0.79 +0.8 126,796 - H281DRAFT_05541 0.18 +0.5 126,923 + H281DRAFT_05541 0.25 +0.5 126,968 - H281DRAFT_05541 0.27 -0.6 126,968 - H281DRAFT_05541 0.27 -0.5 126,978 - H281DRAFT_05541 0.28 -0.1 127,202 + H281DRAFT_05541 0.39 +0.3 127,349 + H281DRAFT_05541 0.47 +0.6
Or see this region's nucleotide sequence