Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05461

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05460 and H281DRAFT_05461 are separated by 275 nucleotidesH281DRAFT_05461 and H281DRAFT_05462 are separated by 77 nucleotidesH281DRAFT_05462 and H281DRAFT_05463 are separated by 102 nucleotides H281DRAFT_05460: H281DRAFT_05460 - 3-(3-hydroxy-phenyl)propionate hydroxylase, at 40,410 to 41,876 _05460 H281DRAFT_05461: H281DRAFT_05461 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 42,152 to 43,003 _05461 H281DRAFT_05462: H281DRAFT_05462 - hypothetical protein, at 43,081 to 43,347 _05462 H281DRAFT_05463: H281DRAFT_05463 - acetyl esterase, at 43,450 to 44,244 _05463 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1at 41.231 kb on - strand, within H281DRAFT_05460at 41.258 kb on - strand, within H281DRAFT_05460at 41.269 kb on + strand, within H281DRAFT_05460at 41.269 kb on + strand, within H281DRAFT_05460at 41.270 kb on - strand, within H281DRAFT_05460at 41.370 kb on + strand, within H281DRAFT_05460at 41.370 kb on + strand, within H281DRAFT_05460at 41.370 kb on + strand, within H281DRAFT_05460at 41.371 kb on - strand, within H281DRAFT_05460at 41.404 kb on + strand, within H281DRAFT_05460at 41.404 kb on + strand, within H281DRAFT_05460at 41.455 kb on - strand, within H281DRAFT_05460at 41.579 kb on - strand, within H281DRAFT_05460at 41.587 kb on + strand, within H281DRAFT_05460at 41.588 kb on - strand, within H281DRAFT_05460at 41.767 kb on + strandat 41.767 kb on + strandat 41.767 kb on + strandat 41.768 kb on - strandat 41.768 kb on - strandat 41.876 kb on + strandat 42.271 kb on + strand, within H281DRAFT_05461at 42.272 kb on - strand, within H281DRAFT_05461at 42.321 kb on + strand, within H281DRAFT_05461at 42.322 kb on - strand, within H281DRAFT_05461at 42.322 kb on - strand, within H281DRAFT_05461at 42.502 kb on + strand, within H281DRAFT_05461at 42.503 kb on - strand, within H281DRAFT_05461at 42.537 kb on + strand, within H281DRAFT_05461at 42.537 kb on + strand, within H281DRAFT_05461at 42.538 kb on - strand, within H281DRAFT_05461at 42.757 kb on - strand, within H281DRAFT_05461at 42.969 kb on - strandat 43.005 kb on + strandat 43.006 kb on - strandat 43.006 kb on - strandat 43.006 kb on - strandat 43.218 kb on + strand, within H281DRAFT_05462at 43.260 kb on + strand, within H281DRAFT_05462at 43.260 kb on + strand, within H281DRAFT_05462at 43.260 kb on + strand, within H281DRAFT_05462at 43.260 kb on + strand, within H281DRAFT_05462at 43.261 kb on - strand, within H281DRAFT_05462at 43.372 kb on - strandat 43.398 kb on + strandat 43.506 kb on + strandat 43.507 kb on - strandat 43.604 kb on + strand, within H281DRAFT_05463at 43.605 kb on - strand, within H281DRAFT_05463at 43.733 kb on + strand, within H281DRAFT_05463at 43.733 kb on + strand, within H281DRAFT_05463at 43.733 kb on + strand, within H281DRAFT_05463at 43.733 kb on + strand, within H281DRAFT_05463at 43.734 kb on - strand, within H281DRAFT_05463at 43.734 kb on - strand, within H281DRAFT_05463at 43.734 kb on - strand, within H281DRAFT_05463at 43.797 kb on - strand, within H281DRAFT_05463at 43.965 kb on + strand, within H281DRAFT_05463at 43.966 kb on - strand, within H281DRAFT_05463at 43.966 kb on - strand, within H281DRAFT_05463

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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41,231 - H281DRAFT_05460 0.56 -0.2
41,258 - H281DRAFT_05460 0.58 +0.6
41,269 + H281DRAFT_05460 0.59 -0.4
41,269 + H281DRAFT_05460 0.59 +0.3
41,270 - H281DRAFT_05460 0.59 -0.3
41,370 + H281DRAFT_05460 0.65 -0.2
41,370 + H281DRAFT_05460 0.65 +0.3
41,370 + H281DRAFT_05460 0.65 +0.1
41,371 - H281DRAFT_05460 0.66 -0.5
41,404 + H281DRAFT_05460 0.68 -0.1
41,404 + H281DRAFT_05460 0.68 -0.1
41,455 - H281DRAFT_05460 0.71 -0.4
41,579 - H281DRAFT_05460 0.80 +0.1
41,587 + H281DRAFT_05460 0.80 +0.8
41,588 - H281DRAFT_05460 0.80 +0.2
41,767 + -0.3
41,767 + +0.4
41,767 + +0.7
41,768 - +0.9
41,768 - +0.7
41,876 + +0.0
42,271 + H281DRAFT_05461 0.14 +1.3
42,272 - H281DRAFT_05461 0.14 -1.2
42,321 + H281DRAFT_05461 0.20 -0.5
42,322 - H281DRAFT_05461 0.20 +1.3
42,322 - H281DRAFT_05461 0.20 +0.7
42,502 + H281DRAFT_05461 0.41 +1.1
42,503 - H281DRAFT_05461 0.41 +0.2
42,537 + H281DRAFT_05461 0.45 -2.1
42,537 + H281DRAFT_05461 0.45 -0.0
42,538 - H281DRAFT_05461 0.45 -0.1
42,757 - H281DRAFT_05461 0.71 -0.3
42,969 - -0.1
43,005 + -0.1
43,006 - -1.3
43,006 - -0.8
43,006 - +0.6
43,218 + H281DRAFT_05462 0.51 +1.4
43,260 + H281DRAFT_05462 0.67 +1.0
43,260 + H281DRAFT_05462 0.67 -0.2
43,260 + H281DRAFT_05462 0.67 +0.2
43,260 + H281DRAFT_05462 0.67 +0.4
43,261 - H281DRAFT_05462 0.67 +0.2
43,372 - +0.9
43,398 + -0.0
43,506 + -0.0
43,507 - -1.1
43,604 + H281DRAFT_05463 0.19 +0.5
43,605 - H281DRAFT_05463 0.19 -0.4
43,733 + H281DRAFT_05463 0.36 -0.4
43,733 + H281DRAFT_05463 0.36 +0.2
43,733 + H281DRAFT_05463 0.36 +0.3
43,733 + H281DRAFT_05463 0.36 -0.1
43,734 - H281DRAFT_05463 0.36 -0.0
43,734 - H281DRAFT_05463 0.36 -1.6
43,734 - H281DRAFT_05463 0.36 +0.0
43,797 - H281DRAFT_05463 0.44 +1.1
43,965 + H281DRAFT_05463 0.65 -0.1
43,966 - H281DRAFT_05463 0.65 -1.0
43,966 - H281DRAFT_05463 0.65 -0.1

Or see this region's nucleotide sequence