Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05374 and H281DRAFT_05375 are separated by 27 nucleotides H281DRAFT_05375 and H281DRAFT_05376 are separated by 245 nucleotides H281DRAFT_05376 and H281DRAFT_05377 are separated by 151 nucleotides
H281DRAFT_05374: H281DRAFT_05374 - hypothetical protein, at 132,408 to 132,599
_05374
H281DRAFT_05375: H281DRAFT_05375 - peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK, at 132,627 to 133,352
_05375
H281DRAFT_05376: H281DRAFT_05376 - hypothetical protein, at 133,598 to 134,572
_05376
H281DRAFT_05377: H281DRAFT_05377 - Inosine-uridine nucleoside N-ribohydrolase, at 134,724 to 135,860
_05377
Position (kb) 133
134
135 Strain fitness (log2 ratio) -1
0
1 at 132.621 kb on + strand at 132.628 kb on + strand at 132.628 kb on + strand at 132.739 kb on + strand, within H281DRAFT_05375 at 132.741 kb on + strand, within H281DRAFT_05375 at 132.741 kb on + strand, within H281DRAFT_05375 at 132.741 kb on + strand, within H281DRAFT_05375 at 132.838 kb on + strand, within H281DRAFT_05375 at 132.838 kb on + strand, within H281DRAFT_05375 at 132.937 kb on + strand, within H281DRAFT_05375 at 133.217 kb on + strand, within H281DRAFT_05375 at 133.217 kb on + strand, within H281DRAFT_05375 at 133.229 kb on + strand, within H281DRAFT_05375 at 133.229 kb on + strand, within H281DRAFT_05375 at 133.447 kb on + strand at 133.461 kb on + strand at 133.501 kb on + strand at 133.502 kb on - strand at 133.509 kb on - strand at 133.556 kb on + strand at 133.557 kb on - strand at 133.559 kb on + strand at 133.658 kb on - strand at 133.658 kb on - strand at 133.727 kb on - strand, within H281DRAFT_05376 at 133.774 kb on - strand, within H281DRAFT_05376 at 134.389 kb on + strand, within H281DRAFT_05376 at 134.411 kb on - strand, within H281DRAFT_05376 at 134.583 kb on + strand at 134.583 kb on + strand at 134.583 kb on + strand at 134.643 kb on - strand at 134.645 kb on + strand at 134.646 kb on - strand at 134.673 kb on + strand at 134.688 kb on + strand at 134.751 kb on + strand at 134.752 kb on - strand at 134.755 kb on + strand at 134.755 kb on + strand at 134.848 kb on - strand, within H281DRAFT_05377 at 135.025 kb on - strand at 135.039 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.340 kb on - strand, within H281DRAFT_05377 at 135.371 kb on + strand, within H281DRAFT_05377 at 135.492 kb on - strand, within H281DRAFT_05377 at 135.502 kb on - strand, within H281DRAFT_05377 at 135.543 kb on - strand, within H281DRAFT_05377 at 135.571 kb on - strand, within H281DRAFT_05377
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 132,621 + -0.1 132,628 + +0.3 132,628 + -0.4 132,739 + H281DRAFT_05375 0.15 +0.1 132,741 + H281DRAFT_05375 0.16 -0.2 132,741 + H281DRAFT_05375 0.16 +1.0 132,741 + H281DRAFT_05375 0.16 +0.1 132,838 + H281DRAFT_05375 0.29 -0.1 132,838 + H281DRAFT_05375 0.29 -0.0 132,937 + H281DRAFT_05375 0.43 +1.7 133,217 + H281DRAFT_05375 0.81 +0.2 133,217 + H281DRAFT_05375 0.81 +0.2 133,229 + H281DRAFT_05375 0.83 -0.2 133,229 + H281DRAFT_05375 0.83 -0.4 133,447 + -0.2 133,461 + +0.5 133,501 + -0.4 133,502 - -0.4 133,509 - +0.5 133,556 + -0.6 133,557 - +0.2 133,559 + +0.1 133,658 - -0.2 133,658 - +0.2 133,727 - H281DRAFT_05376 0.13 +1.6 133,774 - H281DRAFT_05376 0.18 +0.9 134,389 + H281DRAFT_05376 0.81 -0.0 134,411 - H281DRAFT_05376 0.83 -0.2 134,583 + +1.0 134,583 + +0.5 134,583 + +0.6 134,643 - +0.4 134,645 + +0.6 134,646 - +0.4 134,673 + -0.0 134,688 + -0.0 134,751 + +0.2 134,752 - +0.2 134,755 + +0.1 134,755 + +0.9 134,848 - H281DRAFT_05377 0.11 -0.1 135,025 - -1.6 135,039 + H281DRAFT_05377 0.28 +1.4 135,339 + H281DRAFT_05377 0.54 -0.9 135,339 + H281DRAFT_05377 0.54 +0.8 135,339 + H281DRAFT_05377 0.54 +0.9 135,339 + H281DRAFT_05377 0.54 -0.5 135,339 + H281DRAFT_05377 0.54 -0.3 135,340 - H281DRAFT_05377 0.54 -0.9 135,371 + H281DRAFT_05377 0.57 -0.2 135,492 - H281DRAFT_05377 0.68 -0.3 135,502 - H281DRAFT_05377 0.68 +0.9 135,543 - H281DRAFT_05377 0.72 +1.0 135,571 - H281DRAFT_05377 0.74 -0.2
Or see this region's nucleotide sequence