Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03824

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03823 and H281DRAFT_03824 are separated by 362 nucleotidesH281DRAFT_03824 and H281DRAFT_03825 are separated by 150 nucleotides H281DRAFT_03823: H281DRAFT_03823 - methyl-accepting chemotaxis protein-1, serine sensor receptor, at 348,967 to 350,721 _03823 H281DRAFT_03824: H281DRAFT_03824 - zinc transporter, at 351,084 to 352,121 _03824 H281DRAFT_03825: H281DRAFT_03825 - diguanylate cyclase (GGDEF) domain-containing protein, at 352,272 to 353,465 _03825 Position (kb) 351 352 353Strain fitness (log2 ratio) -1 0 1at 350.150 kb on - strand, within H281DRAFT_03823at 350.210 kb on + strand, within H281DRAFT_03823at 350.210 kb on + strand, within H281DRAFT_03823at 350.211 kb on - strand, within H281DRAFT_03823at 350.917 kb on - strandat 350.924 kb on - strandat 351.084 kb on - strandat 351.112 kb on - strandat 351.446 kb on + strand, within H281DRAFT_03824at 351.459 kb on + strand, within H281DRAFT_03824at 351.998 kb on + strand, within H281DRAFT_03824at 352.258 kb on - strandat 352.355 kb on + strandat 352.587 kb on + strand, within H281DRAFT_03825at 352.588 kb on - strand, within H281DRAFT_03825at 352.650 kb on + strand, within H281DRAFT_03825at 352.650 kb on + strand, within H281DRAFT_03825at 353.070 kb on - strand, within H281DRAFT_03825

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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350,150 - H281DRAFT_03823 0.67 -0.5
350,210 + H281DRAFT_03823 0.71 -0.1
350,210 + H281DRAFT_03823 0.71 +0.1
350,211 - H281DRAFT_03823 0.71 -0.2
350,917 - -0.1
350,924 - +0.1
351,084 - +0.5
351,112 - -0.2
351,446 + H281DRAFT_03824 0.35 +0.6
351,459 + H281DRAFT_03824 0.36 +0.0
351,998 + H281DRAFT_03824 0.88 +0.6
352,258 - +1.0
352,355 + -0.2
352,587 + H281DRAFT_03825 0.26 +0.1
352,588 - H281DRAFT_03825 0.26 -0.5
352,650 + H281DRAFT_03825 0.32 -0.7
352,650 + H281DRAFT_03825 0.32 -0.6
353,070 - H281DRAFT_03825 0.67 +0.1

Or see this region's nucleotide sequence