Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03375

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03374 and H281DRAFT_03375 are separated by 526 nucleotidesH281DRAFT_03375 and H281DRAFT_03376 are separated by 376 nucleotides H281DRAFT_03374: H281DRAFT_03374 - hypothetical protein, at 437,610 to 439,712 _03374 H281DRAFT_03375: H281DRAFT_03375 - Dimerisation domain-containing protein, at 440,239 to 441,300 _03375 H281DRAFT_03376: H281DRAFT_03376 - 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase, at 441,677 to 442,684 _03376 Position (kb) 440 441 442Strain fitness (log2 ratio) -1 0 1 2at 439.920 kb on + strandat 440.241 kb on - strandat 440.472 kb on - strand, within H281DRAFT_03375at 440.699 kb on - strand, within H281DRAFT_03375at 440.704 kb on + strand, within H281DRAFT_03375at 440.704 kb on + strandat 440.973 kb on - strand, within H281DRAFT_03375at 440.973 kb on - strand, within H281DRAFT_03375at 441.379 kb on + strandat 441.458 kb on - strandat 441.930 kb on + strand, within H281DRAFT_03376at 442.002 kb on - strand, within H281DRAFT_03376

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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439,920 + -0.2
440,241 - +0.3
440,472 - H281DRAFT_03375 0.22 +2.0
440,699 - H281DRAFT_03375 0.43 +0.4
440,704 + H281DRAFT_03375 0.44 +0.5
440,704 + -0.3
440,973 - H281DRAFT_03375 0.69 +0.7
440,973 - H281DRAFT_03375 0.69 -0.3
441,379 + -0.1
441,458 - -0.3
441,930 + H281DRAFT_03376 0.25 +0.3
442,002 - H281DRAFT_03376 0.32 +0.6

Or see this region's nucleotide sequence