Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02927

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02926 and H281DRAFT_02927 are separated by 52 nucleotidesH281DRAFT_02927 and H281DRAFT_02928 are separated by 401 nucleotides H281DRAFT_02926: H281DRAFT_02926 - diguanylate cyclase/phosphodiesterase, at 535,714 to 537,780 _02926 H281DRAFT_02927: H281DRAFT_02927 - DSF synthase, at 537,833 to 538,720 _02927 H281DRAFT_02928: H281DRAFT_02928 - uncharacterized oxidoreductase, at 539,122 to 540,225 _02928 Position (kb) 537 538 539Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 536.927 kb on - strand, within H281DRAFT_02926at 537.304 kb on - strand, within H281DRAFT_02926at 537.315 kb on - strand, within H281DRAFT_02926at 537.455 kb on + strand, within H281DRAFT_02926at 537.455 kb on + strand, within H281DRAFT_02926at 537.456 kb on - strand, within H281DRAFT_02926at 537.521 kb on + strand, within H281DRAFT_02926at 537.522 kb on - strand, within H281DRAFT_02926at 537.688 kb on + strandat 537.688 kb on + strandat 537.706 kb on + strandat 538.083 kb on + strand, within H281DRAFT_02927at 538.084 kb on - strand, within H281DRAFT_02927at 538.413 kb on + strand, within H281DRAFT_02927at 538.414 kb on - strand, within H281DRAFT_02927at 538.485 kb on + strand, within H281DRAFT_02927at 538.486 kb on - strand, within H281DRAFT_02927at 538.486 kb on - strand, within H281DRAFT_02927at 538.486 kb on - strand, within H281DRAFT_02927at 538.486 kb on - strand, within H281DRAFT_02927at 538.486 kb on - strand, within H281DRAFT_02927at 538.647 kb on + strandat 538.648 kb on - strandat 538.742 kb on - strandat 538.752 kb on - strandat 539.015 kb on - strandat 539.123 kb on + strandat 539.124 kb on - strandat 539.276 kb on + strand, within H281DRAFT_02928at 539.277 kb on - strand, within H281DRAFT_02928at 539.277 kb on - strand, within H281DRAFT_02928at 539.280 kb on + strand, within H281DRAFT_02928at 539.280 kb on + strand, within H281DRAFT_02928at 539.280 kb on + strand, within H281DRAFT_02928at 539.281 kb on - strand, within H281DRAFT_02928at 539.281 kb on - strand, within H281DRAFT_02928at 539.281 kb on - strand, within H281DRAFT_02928at 539.400 kb on + strand, within H281DRAFT_02928at 539.400 kb on + strand, within H281DRAFT_02928at 539.401 kb on - strand, within H281DRAFT_02928at 539.470 kb on + strand, within H281DRAFT_02928at 539.471 kb on - strand, within H281DRAFT_02928at 539.622 kb on - strand, within H281DRAFT_02928at 539.643 kb on - strand, within H281DRAFT_02928

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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536,927 - H281DRAFT_02926 0.59 -2.7
537,304 - H281DRAFT_02926 0.77 -2.8
537,315 - H281DRAFT_02926 0.77 -2.8
537,455 + H281DRAFT_02926 0.84 -2.1
537,455 + H281DRAFT_02926 0.84 -2.4
537,456 - H281DRAFT_02926 0.84 -1.3
537,521 + H281DRAFT_02926 0.87 -2.9
537,522 - H281DRAFT_02926 0.87 -3.2
537,688 + -3.8
537,688 + +0.9
537,706 + -3.3
538,083 + H281DRAFT_02927 0.28 +0.2
538,084 - H281DRAFT_02927 0.28 +0.8
538,413 + H281DRAFT_02927 0.65 +0.1
538,414 - H281DRAFT_02927 0.65 +0.3
538,485 + H281DRAFT_02927 0.73 +0.9
538,486 - H281DRAFT_02927 0.74 +0.6
538,486 - H281DRAFT_02927 0.74 +1.0
538,486 - H281DRAFT_02927 0.74 +0.5
538,486 - H281DRAFT_02927 0.74 +0.4
538,486 - H281DRAFT_02927 0.74 -0.1
538,647 + +0.1
538,648 - +0.4
538,742 - -2.6
538,752 - -1.3
539,015 - +1.0
539,123 + +0.4
539,124 - +1.0
539,276 + H281DRAFT_02928 0.14 +0.5
539,277 - H281DRAFT_02928 0.14 -1.6
539,277 - H281DRAFT_02928 0.14 +0.2
539,280 + H281DRAFT_02928 0.14 -0.2
539,280 + H281DRAFT_02928 0.14 -0.5
539,280 + H281DRAFT_02928 0.14 -0.3
539,281 - H281DRAFT_02928 0.14 +0.4
539,281 - H281DRAFT_02928 0.14 -0.2
539,281 - H281DRAFT_02928 0.14 -0.4
539,400 + H281DRAFT_02928 0.25 +0.4
539,400 + H281DRAFT_02928 0.25 +0.3
539,401 - H281DRAFT_02928 0.25 +0.2
539,470 + H281DRAFT_02928 0.32 -0.5
539,471 - H281DRAFT_02928 0.32 +0.5
539,622 - H281DRAFT_02928 0.45 -0.3
539,643 - H281DRAFT_02928 0.47 +0.6

Or see this region's nucleotide sequence