Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01374 and H281DRAFT_01375 overlap by 4 nucleotides H281DRAFT_01375 and H281DRAFT_01376 are separated by 72 nucleotides
H281DRAFT_01374: H281DRAFT_01374 - transcriptional regulator, GntR family, at 218,911 to 219,705
_01374
H281DRAFT_01375: H281DRAFT_01375 - LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway, at 219,702 to 221,024
_01375
H281DRAFT_01376: H281DRAFT_01376 - 4-oxalomesaconate tautomerase, at 221,097 to 222,203
_01376
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -1
0
1 at 218.773 kb on - strand at 218.909 kb on - strand at 219.199 kb on - strand at 219.201 kb on - strand, within H281DRAFT_01374 at 219.227 kb on + strand, within H281DRAFT_01374 at 219.554 kb on - strand, within H281DRAFT_01374 at 219.934 kb on + strand, within H281DRAFT_01375 at 220.012 kb on + strand, within H281DRAFT_01375 at 220.149 kb on - strand, within H281DRAFT_01375 at 220.149 kb on - strand, within H281DRAFT_01375 at 220.149 kb on - strand, within H281DRAFT_01375 at 220.483 kb on - strand, within H281DRAFT_01375 at 221.761 kb on + strand, within H281DRAFT_01376 at 221.762 kb on - strand, within H281DRAFT_01376 at 221.966 kb on - strand, within H281DRAFT_01376 at 221.966 kb on - strand, within H281DRAFT_01376 at 221.966 kb on - strand, within H281DRAFT_01376
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 218,773 - +1.1 218,909 - +0.3 219,199 - +0.4 219,201 - H281DRAFT_01374 0.36 -0.6 219,227 + H281DRAFT_01374 0.40 -0.6 219,554 - H281DRAFT_01374 0.81 -0.1 219,934 + H281DRAFT_01375 0.18 +1.1 220,012 + H281DRAFT_01375 0.23 +0.1 220,149 - H281DRAFT_01375 0.34 +0.4 220,149 - H281DRAFT_01375 0.34 +0.1 220,149 - H281DRAFT_01375 0.34 +1.2 220,483 - H281DRAFT_01375 0.59 -0.4 221,761 + H281DRAFT_01376 0.60 -0.2 221,762 - H281DRAFT_01376 0.60 +0.3 221,966 - H281DRAFT_01376 0.79 -0.0 221,966 - H281DRAFT_01376 0.79 +0.6 221,966 - H281DRAFT_01376 0.79 +0.1
Or see this region's nucleotide sequence