Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01236

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01234 and H281DRAFT_01235 are separated by 619 nucleotidesH281DRAFT_01235 and H281DRAFT_01236 are separated by 28 nucleotidesH281DRAFT_01236 and H281DRAFT_01237 are separated by 148 nucleotides H281DRAFT_01234: H281DRAFT_01234 - hypothetical protein, at 72,053 to 72,361 _01234 H281DRAFT_01235: H281DRAFT_01235 - DNA-binding protein H-NS, at 72,981 to 73,307 _01235 H281DRAFT_01236: H281DRAFT_01236 - Protein-tyrosine-phosphatase, at 73,336 to 73,845 _01236 H281DRAFT_01237: H281DRAFT_01237 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 73,994 to 74,674 _01237 Position (kb) 73 74Strain fitness (log2 ratio) -1 0 1 2at 72.409 kb on - strandat 72.463 kb on - strandat 72.608 kb on - strandat 72.608 kb on - strandat 72.608 kb on - strandat 72.608 kb on - strandat 72.610 kb on - strandat 72.658 kb on + strandat 72.659 kb on - strandat 72.659 kb on - strandat 72.714 kb on + strandat 72.715 kb on - strandat 72.715 kb on - strandat 72.748 kb on - strandat 72.761 kb on - strandat 72.796 kb on + strandat 72.872 kb on + strandat 72.872 kb on + strandat 72.899 kb on - strandat 72.964 kb on - strandat 72.964 kb on - strandat 72.973 kb on - strandat 72.976 kb on - strandat 73.002 kb on - strandat 73.002 kb on - strandat 73.072 kb on + strand, within H281DRAFT_01235at 73.072 kb on + strand, within H281DRAFT_01235at 73.072 kb on + strandat 73.073 kb on - strand, within H281DRAFT_01235at 73.073 kb on - strand, within H281DRAFT_01235at 73.330 kb on + strandat 73.330 kb on + strandat 73.330 kb on + strandat 73.331 kb on - strandat 73.332 kb on + strandat 73.332 kb on + strandat 73.332 kb on + strandat 73.332 kb on + strandat 73.333 kb on - strandat 73.435 kb on + strand, within H281DRAFT_01236at 73.436 kb on - strand, within H281DRAFT_01236at 73.436 kb on - strand, within H281DRAFT_01236at 73.498 kb on - strand, within H281DRAFT_01236at 73.654 kb on + strand, within H281DRAFT_01236at 73.655 kb on - strand, within H281DRAFT_01236at 73.655 kb on - strand, within H281DRAFT_01236at 73.876 kb on + strandat 73.876 kb on + strandat 73.877 kb on - strandat 73.877 kb on - strandat 73.918 kb on + strandat 73.919 kb on - strandat 73.919 kb on - strandat 73.919 kb on - strandat 73.919 kb on - strandat 73.991 kb on + strandat 73.992 kb on - strandat 73.992 kb on - strandat 74.131 kb on + strand, within H281DRAFT_01237at 74.198 kb on - strand, within H281DRAFT_01237at 74.661 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
72,409 - +0.2
72,463 - +0.8
72,608 - -0.3
72,608 - -0.2
72,608 - -0.2
72,608 - +0.2
72,610 - -0.1
72,658 + -0.4
72,659 - +0.8
72,659 - -0.5
72,714 + +0.7
72,715 - -0.4
72,715 - +0.4
72,748 - -0.3
72,761 - +0.1
72,796 + -0.1
72,872 + -0.3
72,872 + -0.6
72,899 - -0.2
72,964 - -1.5
72,964 - -0.1
72,973 - -0.2
72,976 - +0.2
73,002 - -1.0
73,002 - -0.7
73,072 + H281DRAFT_01235 0.28 +0.7
73,072 + H281DRAFT_01235 0.28 -0.0
73,072 + -1.3
73,073 - H281DRAFT_01235 0.28 -0.7
73,073 - H281DRAFT_01235 0.28 -0.5
73,330 + +0.1
73,330 + +0.5
73,330 + +0.3
73,331 - +0.3
73,332 + -1.2
73,332 + +0.7
73,332 + -0.3
73,332 + +1.6
73,333 - -1.4
73,435 + H281DRAFT_01236 0.19 +0.1
73,436 - H281DRAFT_01236 0.20 +0.1
73,436 - H281DRAFT_01236 0.20 +0.8
73,498 - H281DRAFT_01236 0.32 -1.3
73,654 + H281DRAFT_01236 0.62 +2.0
73,655 - H281DRAFT_01236 0.63 +0.8
73,655 - H281DRAFT_01236 0.63 +0.0
73,876 + +0.4
73,876 + -1.1
73,877 - +1.9
73,877 - +1.1
73,918 + +0.7
73,919 - +0.3
73,919 - +0.3
73,919 - +0.6
73,919 - +0.7
73,991 + +0.3
73,992 - -0.0
73,992 - +0.9
74,131 + H281DRAFT_01237 0.20 -0.1
74,198 - H281DRAFT_01237 0.30 +1.3
74,661 + +0.2

Or see this region's nucleotide sequence