Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04900 and PGA1_c04910 are separated by 197 nucleotides PGA1_c04910 and PGA1_c04920 are separated by 124 nucleotides
PGA1_c04900: PGA1_c04900 - peptidyl-tRNA hydrolase Pth, at 481,557 to 482,315
_c04900
PGA1_c04910: PGA1_c04910 - 50S ribosomal protein L25, at 482,513 to 483,142
_c04910
PGA1_c04920: PGA1_c04920 - l-lactate dehydrogenase IldD, at 483,267 to 484,433
_c04920
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.588 kb on - strand at 481.611 kb on + strand at 481.614 kb on + strand at 481.614 kb on + strand at 481.619 kb on - strand at 481.619 kb on - strand at 481.622 kb on - strand at 481.629 kb on - strand at 481.629 kb on - strand at 481.666 kb on - strand, within PGA1_c04900 at 481.711 kb on - strand, within PGA1_c04900 at 481.750 kb on + strand, within PGA1_c04900 at 481.763 kb on + strand, within PGA1_c04900 at 482.327 kb on - strand at 482.327 kb on - strand at 482.327 kb on - strand at 482.329 kb on - strand at 482.341 kb on - strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.358 kb on + strand at 482.358 kb on + strand at 482.358 kb on + strand at 482.358 kb on - strand at 482.358 kb on - strand at 482.366 kb on - strand at 482.366 kb on - strand at 482.399 kb on + strand at 482.419 kb on - strand at 482.421 kb on + strand at 482.435 kb on + strand at 482.435 kb on + strand at 482.443 kb on - strand at 483.252 kb on - strand at 483.326 kb on - strand at 483.357 kb on + strand at 483.403 kb on - strand, within PGA1_c04920 at 483.418 kb on - strand, within PGA1_c04920 at 483.513 kb on + strand, within PGA1_c04920 at 483.521 kb on - strand, within PGA1_c04920 at 483.521 kb on - strand, within PGA1_c04920 at 483.523 kb on + strand, within PGA1_c04920 at 483.577 kb on - strand, within PGA1_c04920 at 483.584 kb on - strand, within PGA1_c04920 at 483.617 kb on + strand, within PGA1_c04920 at 483.631 kb on + strand, within PGA1_c04920 at 483.682 kb on + strand, within PGA1_c04920 at 483.742 kb on + strand, within PGA1_c04920 at 483.743 kb on + strand, within PGA1_c04920 at 483.751 kb on - strand, within PGA1_c04920 at 483.784 kb on + strand, within PGA1_c04920 at 483.851 kb on + strand, within PGA1_c04920 at 483.885 kb on + strand, within PGA1_c04920 at 483.893 kb on - strand, within PGA1_c04920 at 483.924 kb on + strand, within PGA1_c04920 at 483.924 kb on + strand, within PGA1_c04920 at 483.952 kb on - strand, within PGA1_c04920 at 484.003 kb on + strand, within PGA1_c04920 at 484.007 kb on + strand, within PGA1_c04920 at 484.050 kb on - strand, within PGA1_c04920 at 484.128 kb on - strand, within PGA1_c04920 at 484.138 kb on - strand, within PGA1_c04920
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 481,514 + -0.8 481,514 + +1.8 481,514 + -0.2 481,514 + -1.0 481,514 + +0.4 481,514 + -0.7 481,522 - -0.5 481,522 - +0.5 481,522 - +1.3 481,522 - +0.5 481,522 - -0.0 481,522 - +0.3 481,522 - -0.1 481,522 - +0.5 481,588 - +1.6 481,611 + +0.5 481,614 + -0.5 481,614 + -0.0 481,619 - -0.3 481,619 - -0.1 481,622 - -0.6 481,629 - +0.0 481,629 - +0.1 481,666 - PGA1_c04900 0.14 +0.6 481,711 - PGA1_c04900 0.20 +1.8 481,750 + PGA1_c04900 0.25 +0.6 481,763 + PGA1_c04900 0.27 +0.6 482,327 - +0.8 482,327 - +0.5 482,327 - +0.7 482,329 - +0.7 482,341 - +0.4 482,350 + +0.8 482,350 + +0.8 482,350 + -0.8 482,350 + -0.7 482,358 + -0.8 482,358 + +1.5 482,358 + -0.1 482,358 - -0.0 482,358 - -0.1 482,366 - -0.5 482,366 - +0.3 482,399 + -0.6 482,419 - -1.1 482,421 + -0.7 482,435 + -0.8 482,435 + +0.0 482,443 - -0.1 483,252 - -1.5 483,326 - +1.3 483,357 + +0.4 483,403 - PGA1_c04920 0.12 -0.1 483,418 - PGA1_c04920 0.13 +0.2 483,513 + PGA1_c04920 0.21 -0.0 483,521 - PGA1_c04920 0.22 -0.1 483,521 - PGA1_c04920 0.22 +0.5 483,523 + PGA1_c04920 0.22 -0.4 483,577 - PGA1_c04920 0.27 -0.4 483,584 - PGA1_c04920 0.27 -0.6 483,617 + PGA1_c04920 0.30 +1.5 483,631 + PGA1_c04920 0.31 -0.1 483,682 + PGA1_c04920 0.36 -0.5 483,742 + PGA1_c04920 0.41 +0.2 483,743 + PGA1_c04920 0.41 +1.7 483,751 - PGA1_c04920 0.41 -2.8 483,784 + PGA1_c04920 0.44 +0.5 483,851 + PGA1_c04920 0.50 +0.5 483,885 + PGA1_c04920 0.53 -0.5 483,893 - PGA1_c04920 0.54 +0.5 483,924 + PGA1_c04920 0.56 +1.5 483,924 + PGA1_c04920 0.56 +0.9 483,952 - PGA1_c04920 0.59 +0.9 484,003 + PGA1_c04920 0.63 +0.7 484,007 + PGA1_c04920 0.63 +2.3 484,050 - PGA1_c04920 0.67 +0.7 484,128 - PGA1_c04920 0.74 +0.5 484,138 - PGA1_c04920 0.75 +0.5
Or see this region's nucleotide sequence