Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3643 and HP15_3644 are separated by 949 nucleotides HP15_3644 and HP15_3645 are separated by 83 nucleotides HP15_3645 and HP15_3646 are separated by 96 nucleotides
HP15_3643: HP15_3643 - restriction endonuclease, at 3,836,325 to 3,836,990
_3643
HP15_3644: HP15_3644 - conserved hypothetical protein, secreted, at 3,837,940 to 3,838,212
_3644
HP15_3645: HP15_3645 - hypothetical protein, at 3,838,296 to 3,838,901
_3645
HP15_3646: HP15_3646 - hypothetical protein, at 3,838,998 to 3,839,264
_3646
Position (kb)
3837
3838
3839 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3837.037 kb on + strand at 3837.064 kb on + strand at 3837.067 kb on - strand at 3837.182 kb on + strand at 3837.184 kb on + strand at 3837.225 kb on - strand at 3837.278 kb on + strand at 3837.403 kb on + strand at 3837.432 kb on - strand at 3837.581 kb on - strand at 3837.591 kb on - strand at 3837.608 kb on - strand at 3837.668 kb on - strand at 3837.719 kb on + strand at 3837.793 kb on + strand at 3837.832 kb on - strand at 3837.849 kb on + strand at 3837.897 kb on + strand at 3837.915 kb on + strand at 3837.985 kb on + strand, within HP15_3644 at 3837.993 kb on - strand, within HP15_3644 at 3837.993 kb on - strand, within HP15_3644 at 3838.100 kb on + strand, within HP15_3644 at 3838.214 kb on + strand at 3838.214 kb on + strand at 3838.222 kb on - strand at 3838.266 kb on - strand at 3838.295 kb on + strand at 3838.380 kb on + strand at 3838.535 kb on + strand, within HP15_3645 at 3838.535 kb on + strand, within HP15_3645 at 3838.540 kb on + strand, within HP15_3645 at 3838.611 kb on + strand, within HP15_3645 at 3838.626 kb on + strand, within HP15_3645 at 3838.626 kb on - strand, within HP15_3645 at 3838.648 kb on + strand, within HP15_3645 at 3838.677 kb on - strand, within HP15_3645 at 3838.723 kb on + strand, within HP15_3645 at 3838.769 kb on - strand, within HP15_3645 at 3838.802 kb on + strand, within HP15_3645 at 3838.809 kb on + strand, within HP15_3645 at 3838.814 kb on + strand, within HP15_3645 at 3838.821 kb on - strand, within HP15_3645 at 3838.821 kb on - strand, within HP15_3645 at 3838.919 kb on + strand at 3838.951 kb on - strand at 3838.996 kb on + strand at 3838.996 kb on + strand at 3839.004 kb on - strand at 3839.029 kb on - strand, within HP15_3646 at 3839.071 kb on - strand, within HP15_3646
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 3,837,037 + -2.1 3,837,064 + +1.4 3,837,067 - -0.3 3,837,182 + -0.6 3,837,184 + -1.4 3,837,225 - +2.2 3,837,278 + -0.4 3,837,403 + -0.7 3,837,432 - +1.2 3,837,581 - +1.3 3,837,591 - +0.4 3,837,608 - -2.5 3,837,668 - +2.4 3,837,719 + -0.2 3,837,793 + -0.2 3,837,832 - +0.2 3,837,849 + -1.3 3,837,897 + +0.4 3,837,915 + +1.6 3,837,985 + HP15_3644 0.16 +0.0 3,837,993 - HP15_3644 0.19 -0.5 3,837,993 - HP15_3644 0.19 -0.3 3,838,100 + HP15_3644 0.59 +1.1 3,838,214 + -0.5 3,838,214 + +0.2 3,838,222 - +0.2 3,838,266 - +0.6 3,838,295 + +0.9 3,838,380 + -1.4 3,838,535 + HP15_3645 0.39 +1.2 3,838,535 + HP15_3645 0.39 -2.4 3,838,540 + HP15_3645 0.40 +0.1 3,838,611 + HP15_3645 0.52 -0.9 3,838,626 + HP15_3645 0.54 -0.4 3,838,626 - HP15_3645 0.54 -0.4 3,838,648 + HP15_3645 0.58 +0.5 3,838,677 - HP15_3645 0.63 +0.6 3,838,723 + HP15_3645 0.70 -1.0 3,838,769 - HP15_3645 0.78 -1.6 3,838,802 + HP15_3645 0.83 +0.9 3,838,809 + HP15_3645 0.85 -0.1 3,838,814 + HP15_3645 0.85 +0.5 3,838,821 - HP15_3645 0.87 -0.1 3,838,821 - HP15_3645 0.87 -0.8 3,838,919 + -0.1 3,838,951 - +1.0 3,838,996 + +0.5 3,838,996 + +0.0 3,839,004 - +1.4 3,839,029 - HP15_3646 0.12 +1.3 3,839,071 - HP15_3646 0.27 +0.1
Or see this region's nucleotide sequence