Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00400 and PGA1_262p00410 are separated by 11 nucleotides PGA1_262p00410 and PGA1_262p00420 overlap by 11 nucleotides
PGA1_262p00400: PGA1_262p00400 - putative cytochrome c peroxidase, at 47,516 to 48,868
_262p00400
PGA1_262p00410: PGA1_262p00410 - ASPIC and UnbV., at 48,880 to 50,436
_262p00410
PGA1_262p00420: PGA1_262p00420 - Transcriptional regulator/sugar kinase, at 50,426 to 51,640
_262p00420
Position (kb)
48
49
50
51 Strain fitness (log2 ratio)
-1
0
1
2 at 47.881 kb on - strand, within PGA1_262p00400 at 48.265 kb on - strand, within PGA1_262p00400 at 48.426 kb on - strand, within PGA1_262p00400 at 48.885 kb on - strand at 49.066 kb on + strand, within PGA1_262p00410 at 49.089 kb on - strand, within PGA1_262p00410 at 49.091 kb on + strand, within PGA1_262p00410 at 49.133 kb on - strand, within PGA1_262p00410 at 49.185 kb on + strand, within PGA1_262p00410 at 49.233 kb on + strand, within PGA1_262p00410 at 49.312 kb on + strand, within PGA1_262p00410 at 49.626 kb on - strand, within PGA1_262p00410 at 49.720 kb on - strand, within PGA1_262p00410 at 49.805 kb on + strand, within PGA1_262p00410 at 49.905 kb on - strand, within PGA1_262p00410 at 49.909 kb on - strand, within PGA1_262p00410 at 50.043 kb on - strand, within PGA1_262p00410 at 50.149 kb on + strand, within PGA1_262p00410 at 50.361 kb on + strand at 50.378 kb on + strand at 50.423 kb on + strand at 50.424 kb on + strand at 50.556 kb on + strand, within PGA1_262p00420 at 50.642 kb on + strand, within PGA1_262p00420 at 50.959 kb on - strand, within PGA1_262p00420 at 51.165 kb on - strand, within PGA1_262p00420 at 51.203 kb on + strand, within PGA1_262p00420 at 51.211 kb on - strand, within PGA1_262p00420 at 51.224 kb on + strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.409 kb on + strand, within PGA1_262p00420
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 47,881 - PGA1_262p00400 0.27 -0.3 48,265 - PGA1_262p00400 0.55 -0.2 48,426 - PGA1_262p00400 0.67 +0.1 48,885 - +0.2 49,066 + PGA1_262p00410 0.12 +0.4 49,089 - PGA1_262p00410 0.13 -0.1 49,091 + PGA1_262p00410 0.14 -1.3 49,133 - PGA1_262p00410 0.16 -0.0 49,185 + PGA1_262p00410 0.20 -0.5 49,233 + PGA1_262p00410 0.23 -0.5 49,312 + PGA1_262p00410 0.28 -1.2 49,626 - PGA1_262p00410 0.48 -1.3 49,720 - PGA1_262p00410 0.54 -0.8 49,805 + PGA1_262p00410 0.59 -0.2 49,905 - PGA1_262p00410 0.66 -1.3 49,909 - PGA1_262p00410 0.66 +2.3 50,043 - PGA1_262p00410 0.75 -0.2 50,149 + PGA1_262p00410 0.82 +1.1 50,361 + +0.2 50,378 + +0.1 50,423 + -0.4 50,424 + -0.4 50,556 + PGA1_262p00420 0.11 +0.6 50,642 + PGA1_262p00420 0.18 +0.3 50,959 - PGA1_262p00420 0.44 -0.4 51,165 - PGA1_262p00420 0.61 -0.7 51,203 + PGA1_262p00420 0.64 -1.0 51,211 - PGA1_262p00420 0.65 +0.8 51,224 + PGA1_262p00420 0.66 -0.1 51,387 - PGA1_262p00420 0.79 +0.3 51,387 - PGA1_262p00420 0.79 -1.5 51,409 + PGA1_262p00420 0.81 -0.3
Or see this region's nucleotide sequence