Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2933 and HP15_2934 are separated by 39 nucleotides HP15_2934 and HP15_2935 are separated by 8 nucleotides
HP15_2933: HP15_2933 - serine protein kinase, PrkA, at 3,073,255 to 3,075,177
_2933
HP15_2934: HP15_2934 - protein YeaH, at 3,075,217 to 3,076,506
_2934
HP15_2935: HP15_2935 - SpoVR family protein, at 3,076,515 to 3,078,062
_2935
Position (kb)
3075
3076
3077 Strain fitness (log2 ratio)
-1
0
1
2 at 3074.227 kb on + strand, within HP15_2933 at 3074.237 kb on - strand, within HP15_2933 at 3074.237 kb on - strand, within HP15_2933 at 3074.245 kb on - strand, within HP15_2933 at 3074.288 kb on - strand, within HP15_2933 at 3074.333 kb on - strand, within HP15_2933 at 3074.499 kb on + strand, within HP15_2933 at 3074.507 kb on - strand, within HP15_2933 at 3074.514 kb on - strand, within HP15_2933 at 3074.829 kb on - strand, within HP15_2933 at 3074.918 kb on - strand at 3075.271 kb on + strand at 3075.301 kb on - strand at 3075.326 kb on - strand at 3075.328 kb on + strand at 3075.328 kb on + strand at 3075.336 kb on - strand at 3075.517 kb on - strand, within HP15_2934 at 3075.520 kb on + strand, within HP15_2934 at 3075.547 kb on - strand, within HP15_2934 at 3075.605 kb on + strand, within HP15_2934 at 3075.710 kb on - strand, within HP15_2934 at 3075.774 kb on + strand, within HP15_2934 at 3075.850 kb on - strand, within HP15_2934 at 3076.124 kb on - strand, within HP15_2934 at 3076.177 kb on + strand, within HP15_2934 at 3076.216 kb on - strand, within HP15_2934 at 3076.304 kb on + strand, within HP15_2934 at 3076.336 kb on + strand, within HP15_2934 at 3076.689 kb on - strand, within HP15_2935 at 3076.822 kb on + strand, within HP15_2935 at 3076.822 kb on + strand, within HP15_2935 at 3076.822 kb on + strand, within HP15_2935 at 3076.822 kb on + strand, within HP15_2935 at 3076.861 kb on - strand, within HP15_2935 at 3076.916 kb on + strand, within HP15_2935 at 3077.222 kb on + strand, within HP15_2935 at 3077.233 kb on + strand, within HP15_2935 at 3077.241 kb on - strand, within HP15_2935 at 3077.496 kb on + strand, within HP15_2935 at 3077.496 kb on + strand, within HP15_2935
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 3,074,227 + HP15_2933 0.51 +1.5 3,074,237 - HP15_2933 0.51 +1.4 3,074,237 - HP15_2933 0.51 +0.2 3,074,245 - HP15_2933 0.51 -0.2 3,074,288 - HP15_2933 0.54 +0.4 3,074,333 - HP15_2933 0.56 -0.2 3,074,499 + HP15_2933 0.65 -1.1 3,074,507 - HP15_2933 0.65 +1.4 3,074,514 - HP15_2933 0.65 +0.1 3,074,829 - HP15_2933 0.82 +0.5 3,074,918 - -1.1 3,075,271 + -0.4 3,075,301 - -0.3 3,075,326 - +0.3 3,075,328 + +1.9 3,075,328 + -0.2 3,075,336 - +0.9 3,075,517 - HP15_2934 0.23 -0.6 3,075,520 + HP15_2934 0.23 +0.3 3,075,547 - HP15_2934 0.26 +2.3 3,075,605 + HP15_2934 0.30 -1.1 3,075,710 - HP15_2934 0.38 +0.7 3,075,774 + HP15_2934 0.43 -0.2 3,075,850 - HP15_2934 0.49 -0.4 3,076,124 - HP15_2934 0.70 +1.4 3,076,177 + HP15_2934 0.74 -0.8 3,076,216 - HP15_2934 0.77 +1.3 3,076,304 + HP15_2934 0.84 -1.7 3,076,336 + HP15_2934 0.87 -0.2 3,076,689 - HP15_2935 0.11 -0.1 3,076,822 + HP15_2935 0.20 -0.3 3,076,822 + HP15_2935 0.20 -0.1 3,076,822 + HP15_2935 0.20 -0.1 3,076,822 + HP15_2935 0.20 +1.3 3,076,861 - HP15_2935 0.22 +1.4 3,076,916 + HP15_2935 0.26 +1.8 3,077,222 + HP15_2935 0.46 -0.6 3,077,233 + HP15_2935 0.46 -0.0 3,077,241 - HP15_2935 0.47 +1.3 3,077,496 + HP15_2935 0.63 +0.8 3,077,496 + HP15_2935 0.63 -0.5
Or see this region's nucleotide sequence