Strain Fitness in Marinobacter adhaerens HP15 around HP15_2934

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2933 and HP15_2934 are separated by 39 nucleotidesHP15_2934 and HP15_2935 are separated by 8 nucleotides HP15_2933: HP15_2933 - serine protein kinase, PrkA, at 3,073,255 to 3,075,177 _2933 HP15_2934: HP15_2934 - protein YeaH, at 3,075,217 to 3,076,506 _2934 HP15_2935: HP15_2935 - SpoVR family protein, at 3,076,515 to 3,078,062 _2935 Position (kb) 3075 3076 3077Strain fitness (log2 ratio) -1 0 1 2at 3074.227 kb on + strand, within HP15_2933at 3074.237 kb on - strand, within HP15_2933at 3074.237 kb on - strand, within HP15_2933at 3074.245 kb on - strand, within HP15_2933at 3074.288 kb on - strand, within HP15_2933at 3074.333 kb on - strand, within HP15_2933at 3074.499 kb on + strand, within HP15_2933at 3074.507 kb on - strand, within HP15_2933at 3074.514 kb on - strand, within HP15_2933at 3074.829 kb on - strand, within HP15_2933at 3074.918 kb on - strandat 3075.271 kb on + strandat 3075.301 kb on - strandat 3075.326 kb on - strandat 3075.328 kb on + strandat 3075.328 kb on + strandat 3075.336 kb on - strandat 3075.517 kb on - strand, within HP15_2934at 3075.520 kb on + strand, within HP15_2934at 3075.547 kb on - strand, within HP15_2934at 3075.605 kb on + strand, within HP15_2934at 3075.710 kb on - strand, within HP15_2934at 3075.774 kb on + strand, within HP15_2934at 3075.850 kb on - strand, within HP15_2934at 3076.124 kb on - strand, within HP15_2934at 3076.177 kb on + strand, within HP15_2934at 3076.216 kb on - strand, within HP15_2934at 3076.304 kb on + strand, within HP15_2934at 3076.336 kb on + strand, within HP15_2934at 3076.689 kb on - strand, within HP15_2935at 3076.822 kb on + strand, within HP15_2935at 3076.822 kb on + strand, within HP15_2935at 3076.822 kb on + strand, within HP15_2935at 3076.822 kb on + strand, within HP15_2935at 3076.861 kb on - strand, within HP15_2935at 3076.916 kb on + strand, within HP15_2935at 3077.222 kb on + strand, within HP15_2935at 3077.233 kb on + strand, within HP15_2935at 3077.241 kb on - strand, within HP15_2935at 3077.496 kb on + strand, within HP15_2935at 3077.496 kb on + strand, within HP15_2935

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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3,074,227 + HP15_2933 0.51 +1.5
3,074,237 - HP15_2933 0.51 +1.4
3,074,237 - HP15_2933 0.51 +0.2
3,074,245 - HP15_2933 0.51 -0.2
3,074,288 - HP15_2933 0.54 +0.4
3,074,333 - HP15_2933 0.56 -0.2
3,074,499 + HP15_2933 0.65 -1.1
3,074,507 - HP15_2933 0.65 +1.4
3,074,514 - HP15_2933 0.65 +0.1
3,074,829 - HP15_2933 0.82 +0.5
3,074,918 - -1.1
3,075,271 + -0.4
3,075,301 - -0.3
3,075,326 - +0.3
3,075,328 + +1.9
3,075,328 + -0.2
3,075,336 - +0.9
3,075,517 - HP15_2934 0.23 -0.6
3,075,520 + HP15_2934 0.23 +0.3
3,075,547 - HP15_2934 0.26 +2.3
3,075,605 + HP15_2934 0.30 -1.1
3,075,710 - HP15_2934 0.38 +0.7
3,075,774 + HP15_2934 0.43 -0.2
3,075,850 - HP15_2934 0.49 -0.4
3,076,124 - HP15_2934 0.70 +1.4
3,076,177 + HP15_2934 0.74 -0.8
3,076,216 - HP15_2934 0.77 +1.3
3,076,304 + HP15_2934 0.84 -1.7
3,076,336 + HP15_2934 0.87 -0.2
3,076,689 - HP15_2935 0.11 -0.1
3,076,822 + HP15_2935 0.20 -0.3
3,076,822 + HP15_2935 0.20 -0.1
3,076,822 + HP15_2935 0.20 -0.1
3,076,822 + HP15_2935 0.20 +1.3
3,076,861 - HP15_2935 0.22 +1.4
3,076,916 + HP15_2935 0.26 +1.8
3,077,222 + HP15_2935 0.46 -0.6
3,077,233 + HP15_2935 0.46 -0.0
3,077,241 - HP15_2935 0.47 +1.3
3,077,496 + HP15_2935 0.63 +0.8
3,077,496 + HP15_2935 0.63 -0.5

Or see this region's nucleotide sequence